Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0660 and Rru_A0661 are separated by 172 nucleotides Rru_A0661 and Rru_A0662 are separated by 14 nucleotides Rru_A0662 and Rru_A0663 are separated by 405 nucleotides Rru_A0663 and Rru_A0664 are separated by 232 nucleotides
Rru_A0660: Rru_A0660 - Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI), at 783,368 to 785,245
_A0660
Rru_A0661: Rru_A0661 - Hly-III related proteins (NCBI), at 785,418 to 786,056
_A0661
Rru_A0662: Rru_A0662 - Translation initiation factor IF-1 (NCBI), at 786,071 to 786,358
_A0662
Rru_A0663: Rru_A0663 - Cold-shock DNA-binding domain protein (NCBI), at 786,764 to 786,970
_A0663
Rru_A0664: Rru_A0664 - Signal Transduction Histidine Kinase (NCBI), at 787,203 to 788,237
_A0664
Position (kb) 786
787 Strain fitness (log2 ratio) -1
0
1 at 785.116 kb on + strand at 785.117 kb on - strand at 785.118 kb on + strand at 785.118 kb on + strand at 785.118 kb on + strand at 785.119 kb on - strand at 785.119 kb on - strand at 785.260 kb on - strand at 785.260 kb on - strand at 785.260 kb on - strand at 785.295 kb on + strand at 785.325 kb on + strand at 785.326 kb on - strand at 785.328 kb on - strand at 785.420 kb on - strand at 785.432 kb on - strand at 785.434 kb on + strand at 785.539 kb on + strand, within Rru_A0661 at 785.639 kb on - strand, within Rru_A0661 at 785.776 kb on + strand, within Rru_A0661 at 785.776 kb on + strand, within Rru_A0661 at 785.829 kb on - strand, within Rru_A0661 at 785.858 kb on + strand, within Rru_A0661 at 785.859 kb on - strand, within Rru_A0661 at 785.861 kb on - strand, within Rru_A0661 at 786.030 kb on - strand at 786.436 kb on - strand at 786.582 kb on + strand at 786.582 kb on + strand at 786.583 kb on - strand at 786.583 kb on - strand at 786.766 kb on - strand at 786.782 kb on - strand at 786.880 kb on + strand, within Rru_A0663 at 786.965 kb on - strand at 786.971 kb on + strand at 786.999 kb on + strand at 786.999 kb on + strand at 787.097 kb on + strand at 787.115 kb on + strand at 787.116 kb on - strand at 787.116 kb on - strand at 787.116 kb on - strand at 787.120 kb on - strand at 787.144 kb on + strand at 787.252 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 785,116 + +0.3 785,117 - -0.0 785,118 + +0.2 785,118 + +0.3 785,118 + -1.0 785,119 - +0.7 785,119 - +0.4 785,260 - +1.2 785,260 - -0.0 785,260 - +0.1 785,295 + +0.8 785,325 + -0.0 785,326 - -0.0 785,328 - +0.2 785,420 - -0.1 785,432 - -0.0 785,434 + -0.0 785,539 + Rru_A0661 0.19 +0.7 785,639 - Rru_A0661 0.35 -0.0 785,776 + Rru_A0661 0.56 +0.3 785,776 + Rru_A0661 0.56 -0.4 785,829 - Rru_A0661 0.64 -0.0 785,858 + Rru_A0661 0.69 -0.0 785,859 - Rru_A0661 0.69 +1.2 785,861 - Rru_A0661 0.69 +0.7 786,030 - -0.0 786,436 - -0.0 786,582 + -0.0 786,582 + +1.0 786,583 - -0.0 786,583 - -0.0 786,766 - +0.5 786,782 - -0.0 786,880 + Rru_A0663 0.56 +0.9 786,965 - +0.6 786,971 + -0.0 786,999 + +0.4 786,999 + +0.6 787,097 + +1.0 787,115 + -0.0 787,116 - +0.2 787,116 - +0.9 787,116 - -0.0 787,120 - +0.8 787,144 + +0.2 787,252 + +0.6
Or see this region's nucleotide sequence