Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0646 and Rru_A0647 overlap by 4 nucleotides Rru_A0647 and Rru_A0648 are separated by 52 nucleotides Rru_A0648 and Rru_A0649 are separated by 3 nucleotides
Rru_A0646: Rru_A0646 - Phosphoribosylamine--glycine ligase (NCBI), at 767,803 to 769,113
_A0646
Rru_A0647: Rru_A0647 - Pyridoxal-5'-phosphate-dependent enzyme, beta subunit (NCBI), at 769,110 to 770,102
_A0647
Rru_A0648: Rru_A0648 - hypothetical protein (NCBI), at 770,155 to 770,793
_A0648
Rru_A0649: Rru_A0649 - hypothetical protein (NCBI), at 770,797 to 771,291
_A0649
Position (kb) 769
770
771 Strain fitness (log2 ratio) -1
0
1
2 at 768.767 kb on + strand, within Rru_A0646 at 768.767 kb on + strand, within Rru_A0646 at 768.768 kb on - strand, within Rru_A0646 at 769.567 kb on - strand, within Rru_A0647 at 769.794 kb on - strand, within Rru_A0647 at 769.794 kb on - strand, within Rru_A0647 at 770.200 kb on + strand at 770.200 kb on + strand at 770.201 kb on - strand at 770.201 kb on - strand at 770.201 kb on - strand at 770.201 kb on - strand at 770.394 kb on + strand, within Rru_A0648 at 770.394 kb on + strand, within Rru_A0648 at 770.394 kb on + strand, within Rru_A0648 at 770.394 kb on + strand, within Rru_A0648 at 770.394 kb on + strand, within Rru_A0648 at 770.394 kb on + strand, within Rru_A0648 at 770.395 kb on - strand, within Rru_A0648 at 770.395 kb on - strand, within Rru_A0648 at 770.395 kb on - strand, within Rru_A0648 at 770.396 kb on + strand, within Rru_A0648 at 770.396 kb on + strand, within Rru_A0648 at 770.396 kb on + strand, within Rru_A0648 at 770.396 kb on + strand, within Rru_A0648 at 770.397 kb on - strand, within Rru_A0648 at 770.397 kb on - strand, within Rru_A0648 at 770.397 kb on - strand, within Rru_A0648 at 770.397 kb on - strand, within Rru_A0648 at 770.519 kb on + strand, within Rru_A0648 at 770.520 kb on - strand, within Rru_A0648 at 770.520 kb on - strand, within Rru_A0648 at 770.520 kb on - strand, within Rru_A0648 at 770.520 kb on - strand, within Rru_A0648 at 770.520 kb on - strand, within Rru_A0648 at 770.571 kb on - strand, within Rru_A0648 at 770.759 kb on + strand at 770.759 kb on + strand at 770.760 kb on - strand at 770.981 kb on + strand, within Rru_A0649 at 770.981 kb on + strand, within Rru_A0649 at 770.982 kb on - strand, within Rru_A0649 at 770.982 kb on - strand, within Rru_A0649 at 771.042 kb on + strand, within Rru_A0649 at 771.043 kb on - strand, within Rru_A0649 at 771.043 kb on - strand, within Rru_A0649 at 771.074 kb on + strand, within Rru_A0649 at 771.075 kb on - strand, within Rru_A0649 at 771.075 kb on - strand, within Rru_A0649
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 768,767 + Rru_A0646 0.74 -1.0 768,767 + Rru_A0646 0.74 -1.2 768,768 - Rru_A0646 0.74 -0.0 769,567 - Rru_A0647 0.46 +0.9 769,794 - Rru_A0647 0.69 -0.0 769,794 - Rru_A0647 0.69 +0.8 770,200 + -0.0 770,200 + +0.8 770,201 - +2.3 770,201 - -0.0 770,201 - +0.2 770,201 - +0.9 770,394 + Rru_A0648 0.37 -0.6 770,394 + Rru_A0648 0.37 +0.1 770,394 + Rru_A0648 0.37 +0.4 770,394 + Rru_A0648 0.37 +0.6 770,394 + Rru_A0648 0.37 +0.2 770,394 + Rru_A0648 0.37 +0.1 770,395 - Rru_A0648 0.38 -0.0 770,395 - Rru_A0648 0.38 -0.0 770,395 - Rru_A0648 0.38 +0.4 770,396 + Rru_A0648 0.38 +0.2 770,396 + Rru_A0648 0.38 -0.0 770,396 + Rru_A0648 0.38 +0.6 770,396 + Rru_A0648 0.38 -0.4 770,397 - Rru_A0648 0.38 -0.0 770,397 - Rru_A0648 0.38 -0.0 770,397 - Rru_A0648 0.38 +0.6 770,397 - Rru_A0648 0.38 -0.6 770,519 + Rru_A0648 0.57 +1.4 770,520 - Rru_A0648 0.57 +0.8 770,520 - Rru_A0648 0.57 +0.0 770,520 - Rru_A0648 0.57 +0.1 770,520 - Rru_A0648 0.57 +0.8 770,520 - Rru_A0648 0.57 -0.0 770,571 - Rru_A0648 0.65 -0.0 770,759 + -0.0 770,759 + -0.0 770,760 - +0.3 770,981 + Rru_A0649 0.37 +1.2 770,981 + Rru_A0649 0.37 -1.0 770,982 - Rru_A0649 0.37 -0.0 770,982 - Rru_A0649 0.37 -0.0 771,042 + Rru_A0649 0.49 -0.0 771,043 - Rru_A0649 0.50 +0.6 771,043 - Rru_A0649 0.50 -0.0 771,074 + Rru_A0649 0.56 -0.8 771,075 - Rru_A0649 0.56 -0.0 771,075 - Rru_A0649 0.56 -1.6
Or see this region's nucleotide sequence