Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0634

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0632 and Rru_A0633 are separated by 12 nucleotidesRru_A0633 and Rru_A0634 are separated by 11 nucleotidesRru_A0634 and Rru_A0635 are separated by 165 nucleotides Rru_A0632: Rru_A0632 - chemotaxis sensory transducer (NCBI), at 751,291 to 753,501 _A0632 Rru_A0633: Rru_A0633 - Exonuclease (NCBI), at 753,514 to 754,143 _A0633 Rru_A0634: Rru_A0634 - Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI), at 754,155 to 755,969 _A0634 Rru_A0635: Rru_A0635 - Na+/solute symporter (NCBI), at 756,135 to 757,814 _A0635 Position (kb) 754 755 756Strain fitness (log2 ratio) -1 0 1 2at 753.156 kb on + strand, within Rru_A0632at 753.156 kb on + strand, within Rru_A0632at 753.166 kb on + strand, within Rru_A0632at 753.166 kb on + strand, within Rru_A0632at 753.166 kb on + strand, within Rru_A0632at 753.433 kb on + strandat 753.433 kb on + strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.554 kb on + strandat 753.554 kb on + strandat 753.554 kb on + strandat 753.555 kb on - strandat 753.555 kb on - strandat 753.661 kb on - strand, within Rru_A0633at 753.661 kb on - strand, within Rru_A0633at 753.663 kb on - strand, within Rru_A0633at 753.663 kb on - strand, within Rru_A0633at 753.663 kb on - strand, within Rru_A0633at 753.791 kb on + strand, within Rru_A0633at 753.792 kb on - strand, within Rru_A0633at 753.794 kb on + strand, within Rru_A0633at 753.795 kb on - strand, within Rru_A0633at 753.795 kb on - strand, within Rru_A0633at 754.051 kb on + strand, within Rru_A0633at 754.051 kb on + strand, within Rru_A0633at 754.051 kb on + strand, within Rru_A0633at 754.051 kb on + strand, within Rru_A0633at 754.088 kb on + strandat 754.088 kb on + strandat 754.088 kb on + strandat 754.089 kb on - strandat 754.089 kb on - strandat 754.089 kb on - strandat 754.156 kb on + strandat 754.235 kb on + strandat 754.741 kb on + strand, within Rru_A0634at 754.741 kb on + strand, within Rru_A0634at 754.742 kb on - strand, within Rru_A0634at 754.742 kb on - strand, within Rru_A0634at 754.742 kb on - strand, within Rru_A0634at 754.742 kb on - strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.188 kb on + strand, within Rru_A0634at 755.188 kb on + strand, within Rru_A0634at 755.188 kb on + strand, within Rru_A0634at 755.189 kb on - strand, within Rru_A0634at 755.189 kb on - strand, within Rru_A0634at 755.881 kb on + strandat 755.881 kb on + strandat 755.881 kb on + strandat 755.882 kb on - strandat 755.882 kb on - strandat 756.060 kb on - strandat 756.060 kb on - strandat 756.060 kb on - strandat 756.184 kb on + strandat 756.184 kb on + strandat 756.185 kb on - strandat 756.185 kb on - strandat 756.185 kb on - strandat 756.299 kb on - strandat 756.625 kb on + strand, within Rru_A0635at 756.865 kb on + strand, within Rru_A0635at 756.865 kb on + strand, within Rru_A0635at 756.866 kb on - strand, within Rru_A0635at 756.866 kb on - strand, within Rru_A0635at 756.866 kb on - strand, within Rru_A0635at 756.866 kb on - strand, within Rru_A0635at 756.871 kb on + strand, within Rru_A0635at 756.871 kb on + strand, within Rru_A0635at 756.872 kb on - strand, within Rru_A0635at 756.892 kb on + strand, within Rru_A0635at 756.893 kb on - strand, within Rru_A0635at 756.905 kb on + strand, within Rru_A0635at 756.906 kb on - strand, within Rru_A0635

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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753,156 + Rru_A0632 0.84 +0.2
753,156 + Rru_A0632 0.84 +0.2
753,166 + Rru_A0632 0.85 +1.0
753,166 + Rru_A0632 0.85 -0.7
753,166 + Rru_A0632 0.85 +0.6
753,433 + -0.0
753,433 + +0.5
753,434 - +0.6
753,434 - -0.0
753,434 - +1.0
753,434 - -0.1
753,434 - +1.2
753,434 - +0.4
753,434 - -0.0
753,434 - -0.0
753,434 - -0.8
753,554 + +0.4
753,554 + +0.4
753,554 + +0.9
753,555 - +0.2
753,555 - +0.8
753,661 - Rru_A0633 0.23 +1.6
753,661 - Rru_A0633 0.23 +0.8
753,663 - Rru_A0633 0.24 +0.8
753,663 - Rru_A0633 0.24 -0.0
753,663 - Rru_A0633 0.24 -0.2
753,791 + Rru_A0633 0.44 +0.3
753,792 - Rru_A0633 0.44 -0.0
753,794 + Rru_A0633 0.44 +0.4
753,795 - Rru_A0633 0.45 -0.0
753,795 - Rru_A0633 0.45 -0.2
754,051 + Rru_A0633 0.85 +0.7
754,051 + Rru_A0633 0.85 -0.9
754,051 + Rru_A0633 0.85 +1.1
754,051 + Rru_A0633 0.85 -0.0
754,088 + -0.1
754,088 + -0.0
754,088 + -0.0
754,089 - -1.0
754,089 - -0.3
754,089 - -0.0
754,156 + +1.0
754,235 + -0.0
754,741 + Rru_A0634 0.32 +0.3
754,741 + Rru_A0634 0.32 +1.6
754,742 - Rru_A0634 0.32 +1.4
754,742 - Rru_A0634 0.32 -1.0
754,742 - Rru_A0634 0.32 +0.3
754,742 - Rru_A0634 0.32 +2.3
755,186 + Rru_A0634 0.57 -1.6
755,186 + Rru_A0634 0.57 -0.0
755,186 + Rru_A0634 0.57 +0.5
755,186 + Rru_A0634 0.57 +1.1
755,186 + Rru_A0634 0.57 +0.3
755,186 + Rru_A0634 0.57 +0.1
755,186 + Rru_A0634 0.57 -0.0
755,186 + Rru_A0634 0.57 -0.0
755,186 + Rru_A0634 0.57 +1.0
755,186 + Rru_A0634 0.57 -0.2
755,187 - Rru_A0634 0.57 +0.7
755,187 - Rru_A0634 0.57 +0.2
755,187 - Rru_A0634 0.57 -0.6
755,187 - Rru_A0634 0.57 -0.0
755,187 - Rru_A0634 0.57 -0.0
755,187 - Rru_A0634 0.57 +0.4
755,187 - Rru_A0634 0.57 +2.1
755,187 - Rru_A0634 0.57 +0.5
755,188 + Rru_A0634 0.57 -0.0
755,188 + Rru_A0634 0.57 +1.1
755,188 + Rru_A0634 0.57 -0.0
755,189 - Rru_A0634 0.57 -1.0
755,189 - Rru_A0634 0.57 +1.3
755,881 + +0.7
755,881 + +2.1
755,881 + -0.0
755,882 - -0.0
755,882 - +0.3
756,060 - +0.8
756,060 - -0.0
756,060 - +1.5
756,184 + +0.5
756,184 + +1.4
756,185 - -0.0
756,185 - +1.5
756,185 - -0.0
756,299 - -0.0
756,625 + Rru_A0635 0.29 +0.7
756,865 + Rru_A0635 0.43 +0.1
756,865 + Rru_A0635 0.43 -0.5
756,866 - Rru_A0635 0.44 +1.4
756,866 - Rru_A0635 0.44 -1.0
756,866 - Rru_A0635 0.44 +1.0
756,866 - Rru_A0635 0.44 +0.9
756,871 + Rru_A0635 0.44 +0.4
756,871 + Rru_A0635 0.44 +0.2
756,872 - Rru_A0635 0.44 -0.0
756,892 + Rru_A0635 0.45 +0.3
756,893 - Rru_A0635 0.45 +0.2
756,905 + Rru_A0635 0.46 -0.0
756,906 - Rru_A0635 0.46 -0.5

Or see this region's nucleotide sequence