Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0628

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0626 and Rru_A0627 are separated by 83 nucleotidesRru_A0627 and Rru_A0628 overlap by 4 nucleotidesRru_A0628 and Rru_A0629 overlap by 1 nucleotides Rru_A0626: Rru_A0626 - Transcriptional Regulator, Fis family (NCBI), at 744,088 to 745,506 _A0626 Rru_A0627: Rru_A0627 - Bacteriochlorophyll/chlorophyll synthetase (NCBI), at 745,590 to 746,501 _A0627 Rru_A0628: Rru_A0628 - PUCC protein (NCBI), at 746,498 to 747,847 _A0628 Rru_A0629: Rru_A0629 - Geranylgeranyl reductase (NCBI), at 747,847 to 749,088 _A0629 Position (kb) 746 747 748Strain fitness (log2 ratio) -3 -2 -1 0 1at 745.551 kb on - strandat 745.553 kb on - strandat 745.579 kb on - strandat 745.614 kb on + strandat 745.638 kb on - strandat 745.638 kb on - strandat 745.860 kb on + strand, within Rru_A0627at 745.861 kb on - strand, within Rru_A0627at 745.861 kb on - strand, within Rru_A0627at 745.861 kb on - strand, within Rru_A0627at 745.861 kb on - strand, within Rru_A0627at 745.862 kb on + strand, within Rru_A0627at 745.863 kb on - strand, within Rru_A0627at 745.863 kb on - strand, within Rru_A0627at 745.963 kb on - strand, within Rru_A0627at 745.965 kb on - strand, within Rru_A0627at 746.112 kb on + strand, within Rru_A0627at 746.113 kb on - strand, within Rru_A0627at 746.114 kb on + strand, within Rru_A0627at 746.114 kb on + strand, within Rru_A0627at 746.114 kb on + strand, within Rru_A0627at 746.115 kb on - strand, within Rru_A0627at 746.115 kb on - strand, within Rru_A0627at 746.145 kb on - strand, within Rru_A0627at 746.145 kb on - strand, within Rru_A0627at 746.299 kb on - strand, within Rru_A0627at 746.299 kb on - strand, within Rru_A0627at 746.388 kb on + strand, within Rru_A0627at 746.388 kb on + strand, within Rru_A0627at 746.388 kb on + strand, within Rru_A0627at 746.388 kb on + strand, within Rru_A0627at 746.389 kb on - strand, within Rru_A0627at 746.389 kb on - strand, within Rru_A0627at 746.389 kb on - strand, within Rru_A0627at 746.390 kb on + strand, within Rru_A0627at 746.391 kb on - strand, within Rru_A0627at 746.391 kb on - strand, within Rru_A0627at 746.391 kb on - strand, within Rru_A0627at 746.391 kb on - strand, within Rru_A0627at 746.412 kb on + strandat 746.412 kb on + strandat 746.412 kb on + strandat 746.412 kb on + strandat 746.412 kb on + strandat 746.412 kb on + strandat 746.412 kb on + strandat 746.413 kb on - strandat 746.413 kb on - strandat 746.550 kb on + strandat 747.017 kb on + strand, within Rru_A0628at 747.017 kb on + strand, within Rru_A0628at 747.018 kb on - strand, within Rru_A0628at 747.019 kb on + strand, within Rru_A0628at 747.019 kb on + strand, within Rru_A0628at 747.019 kb on + strand, within Rru_A0628at 747.020 kb on - strand, within Rru_A0628at 747.020 kb on - strand, within Rru_A0628at 747.236 kb on + strand, within Rru_A0628at 747.237 kb on - strand, within Rru_A0628at 747.237 kb on - strand, within Rru_A0628at 747.237 kb on - strand, within Rru_A0628at 747.713 kb on + strandat 747.713 kb on + strandat 748.291 kb on - strand, within Rru_A0629at 748.307 kb on - strand, within Rru_A0629at 748.307 kb on - strand, within Rru_A0629at 748.463 kb on - strand, within Rru_A0629at 748.463 kb on - strand, within Rru_A0629at 748.516 kb on + strand, within Rru_A0629at 748.517 kb on - strand, within Rru_A0629at 748.547 kb on + strand, within Rru_A0629at 748.547 kb on + strand, within Rru_A0629at 748.547 kb on + strand, within Rru_A0629at 748.548 kb on - strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.763 kb on - strand, within Rru_A0629at 748.763 kb on - strand, within Rru_A0629at 748.763 kb on - strand, within Rru_A0629at 748.763 kb on - strand, within Rru_A0629at 748.763 kb on - strand, within Rru_A0629at 748.766 kb on - strand, within Rru_A0629

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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745,551 - -2.3
745,553 - -1.0
745,579 - -0.0
745,614 + -1.0
745,638 - -0.0
745,638 - -0.0
745,860 + Rru_A0627 0.30 -0.3
745,861 - Rru_A0627 0.30 -0.0
745,861 - Rru_A0627 0.30 -0.0
745,861 - Rru_A0627 0.30 -2.2
745,861 - Rru_A0627 0.30 -0.0
745,862 + Rru_A0627 0.30 -0.0
745,863 - Rru_A0627 0.30 -0.0
745,863 - Rru_A0627 0.30 -0.0
745,963 - Rru_A0627 0.41 -0.0
745,965 - Rru_A0627 0.41 -0.0
746,112 + Rru_A0627 0.57 -3.7
746,113 - Rru_A0627 0.57 -2.6
746,114 + Rru_A0627 0.57 -2.0
746,114 + Rru_A0627 0.57 -0.0
746,114 + Rru_A0627 0.57 -0.0
746,115 - Rru_A0627 0.58 -1.6
746,115 - Rru_A0627 0.58 -0.0
746,145 - Rru_A0627 0.61 -0.0
746,145 - Rru_A0627 0.61 -0.0
746,299 - Rru_A0627 0.78 -0.0
746,299 - Rru_A0627 0.78 -0.0
746,388 + Rru_A0627 0.88 -2.5
746,388 + Rru_A0627 0.88 -2.1
746,388 + Rru_A0627 0.88 -2.3
746,388 + Rru_A0627 0.88 -0.0
746,389 - Rru_A0627 0.88 -1.0
746,389 - Rru_A0627 0.88 -1.3
746,389 - Rru_A0627 0.88 -2.0
746,390 + Rru_A0627 0.88 -0.0
746,391 - Rru_A0627 0.88 -2.2
746,391 - Rru_A0627 0.88 -1.6
746,391 - Rru_A0627 0.88 -0.0
746,391 - Rru_A0627 0.88 -1.6
746,412 + -0.0
746,412 + -3.0
746,412 + -0.0
746,412 + -2.8
746,412 + -2.3
746,412 + -3.3
746,412 + -0.0
746,413 - -0.0
746,413 - -3.2
746,550 + -0.0
747,017 + Rru_A0628 0.38 -0.7
747,017 + Rru_A0628 0.38 -0.0
747,018 - Rru_A0628 0.39 -0.0
747,019 + Rru_A0628 0.39 -0.0
747,019 + Rru_A0628 0.39 +1.1
747,019 + Rru_A0628 0.39 -1.0
747,020 - Rru_A0628 0.39 -1.3
747,020 - Rru_A0628 0.39 -0.0
747,236 + Rru_A0628 0.55 -1.2
747,237 - Rru_A0628 0.55 -2.3
747,237 - Rru_A0628 0.55 -1.0
747,237 - Rru_A0628 0.55 -0.0
747,713 + +1.3
747,713 + -0.0
748,291 - Rru_A0629 0.36 -0.0
748,307 - Rru_A0629 0.37 -0.0
748,307 - Rru_A0629 0.37 -1.6
748,463 - Rru_A0629 0.50 -0.3
748,463 - Rru_A0629 0.50 -0.0
748,516 + Rru_A0629 0.54 -0.0
748,517 - Rru_A0629 0.54 -1.1
748,547 + Rru_A0629 0.56 -0.0
748,547 + Rru_A0629 0.56 +1.0
748,547 + Rru_A0629 0.56 -1.1
748,548 - Rru_A0629 0.56 -0.4
748,762 + Rru_A0629 0.74 -0.8
748,762 + Rru_A0629 0.74 -1.7
748,762 + Rru_A0629 0.74 -0.0
748,762 + Rru_A0629 0.74 -0.6
748,762 + Rru_A0629 0.74 -0.0
748,762 + Rru_A0629 0.74 -0.0
748,762 + Rru_A0629 0.74 -1.8
748,762 + Rru_A0629 0.74 -1.8
748,763 - Rru_A0629 0.74 -0.9
748,763 - Rru_A0629 0.74 -2.6
748,763 - Rru_A0629 0.74 -1.6
748,763 - Rru_A0629 0.74 -0.0
748,763 - Rru_A0629 0.74 -1.2
748,766 - Rru_A0629 0.74 -0.0

Or see this region's nucleotide sequence