Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0624

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0623 and Rru_A0624 overlap by 4 nucleotidesRru_A0624 and Rru_A0625 are separated by 505 nucleotides Rru_A0623: Rru_A0623 - Light-independent protochlorophyllide reductase, N subunit (NCBI), at 740,454 to 741,776 _A0623 Rru_A0624: Rru_A0624 - 2-vinyl bacteriochlorophyllide hydratase (NCBI), at 741,773 to 742,354 _A0624 Rru_A0625: Rru_A0625 - hypothetical protein (NCBI), at 742,860 to 743,405 _A0625 Position (kb) 741 742 743Strain fitness (log2 ratio) -3 -2 -1 0 1at 741.308 kb on - strand, within Rru_A0623at 741.855 kb on + strand, within Rru_A0624at 741.855 kb on + strand, within Rru_A0624at 741.856 kb on - strand, within Rru_A0624at 741.856 kb on - strand, within Rru_A0624at 741.864 kb on + strand, within Rru_A0624at 741.864 kb on + strand, within Rru_A0624at 741.864 kb on + strand, within Rru_A0624at 741.930 kb on + strand, within Rru_A0624at 741.931 kb on - strand, within Rru_A0624at 741.931 kb on - strand, within Rru_A0624at 742.048 kb on + strand, within Rru_A0624at 742.048 kb on + strand, within Rru_A0624at 742.049 kb on - strand, within Rru_A0624at 742.049 kb on - strand, within Rru_A0624at 742.049 kb on - strand, within Rru_A0624at 742.049 kb on - strand, within Rru_A0624at 742.050 kb on + strand, within Rru_A0624at 742.050 kb on + strand, within Rru_A0624at 742.051 kb on - strand, within Rru_A0624at 742.051 kb on - strand, within Rru_A0624at 742.116 kb on + strand, within Rru_A0624at 742.131 kb on + strand, within Rru_A0624at 742.132 kb on - strand, within Rru_A0624at 742.230 kb on + strand, within Rru_A0624at 742.230 kb on + strand, within Rru_A0624at 742.230 kb on + strand, within Rru_A0624at 742.230 kb on + strand, within Rru_A0624at 742.231 kb on - strand, within Rru_A0624at 742.231 kb on - strand, within Rru_A0624at 742.402 kb on + strandat 742.402 kb on + strandat 742.402 kb on + strandat 742.526 kb on + strandat 742.564 kb on + strandat 742.667 kb on - strandat 742.689 kb on + strandat 742.833 kb on + strandat 742.833 kb on + strandat 742.834 kb on - strandat 742.836 kb on + strandat 742.836 kb on + strandat 742.836 kb on + strandat 742.837 kb on - strandat 742.837 kb on - strandat 742.837 kb on - strandat 742.976 kb on + strand, within Rru_A0625at 743.196 kb on + strand, within Rru_A0625at 743.197 kb on - strand, within Rru_A0625at 743.315 kb on + strand, within Rru_A0625

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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741,308 - Rru_A0623 0.65 -0.0
741,855 + Rru_A0624 0.14 -0.0
741,855 + Rru_A0624 0.14 -0.0
741,856 - Rru_A0624 0.14 -2.0
741,856 - Rru_A0624 0.14 -0.0
741,864 + Rru_A0624 0.16 -0.0
741,864 + Rru_A0624 0.16 +0.6
741,864 + Rru_A0624 0.16 -3.7
741,930 + Rru_A0624 0.27 -1.0
741,931 - Rru_A0624 0.27 -0.0
741,931 - Rru_A0624 0.27 -1.0
742,048 + Rru_A0624 0.47 -2.0
742,048 + Rru_A0624 0.47 -0.0
742,049 - Rru_A0624 0.47 -1.0
742,049 - Rru_A0624 0.47 -0.0
742,049 - Rru_A0624 0.47 -2.8
742,049 - Rru_A0624 0.47 -0.0
742,050 + Rru_A0624 0.48 -0.0
742,050 + Rru_A0624 0.48 -2.0
742,051 - Rru_A0624 0.48 -0.0
742,051 - Rru_A0624 0.48 -1.0
742,116 + Rru_A0624 0.59 -2.3
742,131 + Rru_A0624 0.62 -2.0
742,132 - Rru_A0624 0.62 -0.4
742,230 + Rru_A0624 0.79 -0.0
742,230 + Rru_A0624 0.79 -1.2
742,230 + Rru_A0624 0.79 -1.4
742,230 + Rru_A0624 0.79 -0.0
742,231 - Rru_A0624 0.79 -3.0
742,231 - Rru_A0624 0.79 -3.4
742,402 + -1.0
742,402 + -1.0
742,402 + -1.8
742,526 + -2.8
742,564 + -0.0
742,667 - -0.0
742,689 + +0.6
742,833 + -0.0
742,833 + -0.0
742,834 - -0.0
742,836 + -0.0
742,836 + +1.2
742,836 + -0.0
742,837 - -1.6
742,837 - -0.0
742,837 - -1.9
742,976 + Rru_A0625 0.21 -0.0
743,196 + Rru_A0625 0.62 +0.4
743,197 - Rru_A0625 0.62 -0.0
743,315 + Rru_A0625 0.83 -0.0

Or see this region's nucleotide sequence