Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0621

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0619 and Rru_A0620 overlap by 1 nucleotidesRru_A0620 and Rru_A0621 are separated by 34 nucleotidesRru_A0621 and Rru_A0622 overlap by 26 nucleotides Rru_A0619: Rru_A0619 - Magnesium protoporphyrin O-methyltransferase (NCBI), at 733,474 to 734,184 _A0619 Rru_A0620: Rru_A0620 - Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (NCBI), at 734,184 to 735,071 _A0620 Rru_A0621: Rru_A0621 - Magnesium-chelatase, subunit H (NCBI), at 735,106 to 738,834 _A0621 Rru_A0622: Rru_A0622 - Light-independent protochlorophyllide reductase, B subunit (NCBI), at 738,809 to 740,449 _A0622 Position (kb) 735 736 737 738 739Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 734.139 kb on - strandat 734.168 kb on + strandat 734.168 kb on + strandat 734.168 kb on + strandat 734.168 kb on + strandat 734.169 kb on - strandat 734.169 kb on - strandat 734.220 kb on + strandat 734.221 kb on - strandat 734.221 kb on - strandat 734.281 kb on + strand, within Rru_A0620at 734.282 kb on - strand, within Rru_A0620at 734.476 kb on + strand, within Rru_A0620at 734.476 kb on + strand, within Rru_A0620at 734.476 kb on + strand, within Rru_A0620at 734.476 kb on + strand, within Rru_A0620at 734.692 kb on + strand, within Rru_A0620at 734.692 kb on + strand, within Rru_A0620at 734.752 kb on + strand, within Rru_A0620at 734.753 kb on - strand, within Rru_A0620at 734.753 kb on - strand, within Rru_A0620at 734.753 kb on - strand, within Rru_A0620at 734.753 kb on - strand, within Rru_A0620at 734.968 kb on + strand, within Rru_A0620at 734.968 kb on + strand, within Rru_A0620at 734.968 kb on + strand, within Rru_A0620at 734.968 kb on + strand, within Rru_A0620at 734.969 kb on - strand, within Rru_A0620at 735.074 kb on + strandat 735.075 kb on - strandat 735.075 kb on - strandat 735.075 kb on - strandat 735.078 kb on + strandat 735.078 kb on + strandat 735.078 kb on + strandat 735.079 kb on - strandat 735.127 kb on + strandat 735.127 kb on + strandat 735.203 kb on + strandat 735.203 kb on + strandat 735.203 kb on + strandat 735.203 kb on + strandat 735.321 kb on + strandat 735.322 kb on - strandat 735.322 kb on - strandat 735.323 kb on + strandat 735.407 kb on + strandat 735.408 kb on - strandat 735.431 kb on + strandat 735.527 kb on + strand, within Rru_A0621at 735.528 kb on - strand, within Rru_A0621at 735.528 kb on - strand, within Rru_A0621at 735.528 kb on - strand, within Rru_A0621at 735.528 kb on - strand, within Rru_A0621at 735.528 kb on - strand, within Rru_A0621at 735.593 kb on + strand, within Rru_A0621at 735.713 kb on + strand, within Rru_A0621at 735.806 kb on + strand, within Rru_A0621at 735.807 kb on - strand, within Rru_A0621at 735.873 kb on + strand, within Rru_A0621at 735.873 kb on + strand, within Rru_A0621at 735.874 kb on - strand, within Rru_A0621at 735.874 kb on - strand, within Rru_A0621at 735.874 kb on - strand, within Rru_A0621at 735.875 kb on + strand, within Rru_A0621at 735.876 kb on - strand, within Rru_A0621at 735.876 kb on - strand, within Rru_A0621at 735.876 kb on - strand, within Rru_A0621at 735.899 kb on + strand, within Rru_A0621at 735.899 kb on + strand, within Rru_A0621at 735.900 kb on - strand, within Rru_A0621at 735.900 kb on - strand, within Rru_A0621at 736.073 kb on + strand, within Rru_A0621at 736.395 kb on + strand, within Rru_A0621at 736.640 kb on + strand, within Rru_A0621at 736.640 kb on + strand, within Rru_A0621at 736.640 kb on + strand, within Rru_A0621at 736.641 kb on - strand, within Rru_A0621at 736.641 kb on - strand, within Rru_A0621at 736.641 kb on - strand, within Rru_A0621at 736.641 kb on - strand, within Rru_A0621at 736.641 kb on - strand, within Rru_A0621at 736.874 kb on + strand, within Rru_A0621at 736.875 kb on - strand, within Rru_A0621at 736.875 kb on - strand, within Rru_A0621at 736.875 kb on - strand, within Rru_A0621at 736.875 kb on - strand, within Rru_A0621at 736.875 kb on - strand, within Rru_A0621at 736.940 kb on + strand, within Rru_A0621at 736.940 kb on + strand, within Rru_A0621at 736.940 kb on + strand, within Rru_A0621at 736.946 kb on + strand, within Rru_A0621at 736.946 kb on + strand, within Rru_A0621at 736.946 kb on + strand, within Rru_A0621at 736.947 kb on - strand, within Rru_A0621at 736.947 kb on - strand, within Rru_A0621at 736.947 kb on - strand, within Rru_A0621at 736.947 kb on - strand, within Rru_A0621at 736.947 kb on - strand, within Rru_A0621at 736.947 kb on - strand, within Rru_A0621at 736.947 kb on - strand, within Rru_A0621at 737.090 kb on + strand, within Rru_A0621at 737.090 kb on + strand, within Rru_A0621at 737.090 kb on + strand, within Rru_A0621at 737.417 kb on + strand, within Rru_A0621at 737.462 kb on + strand, within Rru_A0621at 737.462 kb on + strand, within Rru_A0621at 737.463 kb on - strand, within Rru_A0621at 737.474 kb on + strand, within Rru_A0621at 737.474 kb on + strand, within Rru_A0621at 737.474 kb on + strand, within Rru_A0621at 737.860 kb on - strand, within Rru_A0621at 737.861 kb on + strand, within Rru_A0621at 737.861 kb on + strand, within Rru_A0621at 737.861 kb on + strand, within Rru_A0621at 737.862 kb on - strand, within Rru_A0621at 737.862 kb on - strand, within Rru_A0621at 737.939 kb on + strand, within Rru_A0621at 737.939 kb on + strand, within Rru_A0621at 737.939 kb on + strand, within Rru_A0621at 737.940 kb on - strand, within Rru_A0621at 737.940 kb on - strand, within Rru_A0621at 737.940 kb on - strand, within Rru_A0621at 737.940 kb on - strand, within Rru_A0621at 737.940 kb on - strand, within Rru_A0621at 738.033 kb on - strand, within Rru_A0621at 738.057 kb on + strand, within Rru_A0621at 738.057 kb on + strand, within Rru_A0621at 738.058 kb on - strand, within Rru_A0621at 738.058 kb on - strand, within Rru_A0621at 738.059 kb on + strand, within Rru_A0621at 738.059 kb on + strand, within Rru_A0621at 738.162 kb on - strand, within Rru_A0621at 738.162 kb on - strand, within Rru_A0621at 738.162 kb on - strand, within Rru_A0621at 738.265 kb on - strand, within Rru_A0621at 738.265 kb on - strand, within Rru_A0621at 738.317 kb on + strand, within Rru_A0621at 738.318 kb on - strand, within Rru_A0621at 738.591 kb on + strandat 738.591 kb on + strandat 738.591 kb on + strandat 738.591 kb on + strandat 738.592 kb on - strandat 738.713 kb on - strandat 738.837 kb on + strandat 738.837 kb on + strandat 738.838 kb on - strandat 739.328 kb on - strand, within Rru_A0622at 739.398 kb on + strand, within Rru_A0622at 739.398 kb on + strand, within Rru_A0622at 739.399 kb on - strand, within Rru_A0622at 739.462 kb on - strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.474 kb on - strand, within Rru_A0622at 739.474 kb on - strand, within Rru_A0622at 739.474 kb on - strand, within Rru_A0622at 739.474 kb on - strand, within Rru_A0622at 739.474 kb on - strand, within Rru_A0622at 739.581 kb on + strand, within Rru_A0622

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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734,139 - -3.3
734,168 + -1.0
734,168 + -0.0
734,168 + -0.0
734,168 + -2.6
734,169 - -0.0
734,169 - -0.0
734,220 + -0.0
734,221 - -0.0
734,221 - -1.6
734,281 + Rru_A0620 0.11 -3.3
734,282 - Rru_A0620 0.11 -3.0
734,476 + Rru_A0620 0.33 -3.0
734,476 + Rru_A0620 0.33 -0.0
734,476 + Rru_A0620 0.33 -1.6
734,476 + Rru_A0620 0.33 -0.0
734,692 + Rru_A0620 0.57 -1.6
734,692 + Rru_A0620 0.57 -0.0
734,752 + Rru_A0620 0.64 -0.0
734,753 - Rru_A0620 0.64 -4.6
734,753 - Rru_A0620 0.64 -0.0
734,753 - Rru_A0620 0.64 -2.0
734,753 - Rru_A0620 0.64 -0.0
734,968 + Rru_A0620 0.88 -0.0
734,968 + Rru_A0620 0.88 -2.5
734,968 + Rru_A0620 0.88 -0.0
734,968 + Rru_A0620 0.88 -2.3
734,969 - Rru_A0620 0.88 -0.0
735,074 + -2.0
735,075 - -0.0
735,075 - -0.0
735,075 - -0.0
735,078 + -0.0
735,078 + -0.0
735,078 + -0.0
735,079 - -1.2
735,127 + -2.0
735,127 + -0.0
735,203 + -1.0
735,203 + -1.0
735,203 + -2.8
735,203 + -2.2
735,321 + -2.5
735,322 - -0.0
735,322 - -1.0
735,323 + -0.0
735,407 + -0.0
735,408 - -0.0
735,431 + -2.0
735,527 + Rru_A0621 0.11 -0.0
735,528 - Rru_A0621 0.11 -1.9
735,528 - Rru_A0621 0.11 -1.0
735,528 - Rru_A0621 0.11 -0.0
735,528 - Rru_A0621 0.11 -0.0
735,528 - Rru_A0621 0.11 -0.0
735,593 + Rru_A0621 0.13 -0.0
735,713 + Rru_A0621 0.16 -3.8
735,806 + Rru_A0621 0.19 -0.0
735,807 - Rru_A0621 0.19 -0.0
735,873 + Rru_A0621 0.21 -3.1
735,873 + Rru_A0621 0.21 -0.0
735,874 - Rru_A0621 0.21 -0.0
735,874 - Rru_A0621 0.21 -2.3
735,874 - Rru_A0621 0.21 -0.4
735,875 + Rru_A0621 0.21 -0.0
735,876 - Rru_A0621 0.21 -2.3
735,876 - Rru_A0621 0.21 -0.0
735,876 - Rru_A0621 0.21 -0.0
735,899 + Rru_A0621 0.21 -0.0
735,899 + Rru_A0621 0.21 -2.5
735,900 - Rru_A0621 0.21 -0.2
735,900 - Rru_A0621 0.21 -0.0
736,073 + Rru_A0621 0.26 -1.6
736,395 + Rru_A0621 0.35 -0.0
736,640 + Rru_A0621 0.41 -0.0
736,640 + Rru_A0621 0.41 -1.9
736,640 + Rru_A0621 0.41 -0.0
736,641 - Rru_A0621 0.41 -0.0
736,641 - Rru_A0621 0.41 -0.0
736,641 - Rru_A0621 0.41 -0.0
736,641 - Rru_A0621 0.41 +1.0
736,641 - Rru_A0621 0.41 -0.0
736,874 + Rru_A0621 0.47 -0.0
736,875 - Rru_A0621 0.47 -1.7
736,875 - Rru_A0621 0.47 -0.0
736,875 - Rru_A0621 0.47 -2.5
736,875 - Rru_A0621 0.47 +1.6
736,875 - Rru_A0621 0.47 -0.0
736,940 + Rru_A0621 0.49 -0.0
736,940 + Rru_A0621 0.49 -0.0
736,940 + Rru_A0621 0.49 -2.8
736,946 + Rru_A0621 0.49 -1.9
736,946 + Rru_A0621 0.49 -0.0
736,946 + Rru_A0621 0.49 -3.0
736,947 - Rru_A0621 0.49 -1.0
736,947 - Rru_A0621 0.49 -0.0
736,947 - Rru_A0621 0.49 -0.0
736,947 - Rru_A0621 0.49 -1.8
736,947 - Rru_A0621 0.49 -2.0
736,947 - Rru_A0621 0.49 -1.0
736,947 - Rru_A0621 0.49 -2.0
737,090 + Rru_A0621 0.53 -3.0
737,090 + Rru_A0621 0.53 -3.2
737,090 + Rru_A0621 0.53 -1.9
737,417 + Rru_A0621 0.62 -1.9
737,462 + Rru_A0621 0.63 -3.5
737,462 + Rru_A0621 0.63 -0.0
737,463 - Rru_A0621 0.63 -0.0
737,474 + Rru_A0621 0.64 -1.0
737,474 + Rru_A0621 0.64 -0.0
737,474 + Rru_A0621 0.64 -0.0
737,860 - Rru_A0621 0.74 -0.0
737,861 + Rru_A0621 0.74 -1.6
737,861 + Rru_A0621 0.74 -2.8
737,861 + Rru_A0621 0.74 -0.0
737,862 - Rru_A0621 0.74 -1.0
737,862 - Rru_A0621 0.74 -0.0
737,939 + Rru_A0621 0.76 -0.0
737,939 + Rru_A0621 0.76 -0.0
737,939 + Rru_A0621 0.76 -0.0
737,940 - Rru_A0621 0.76 -2.5
737,940 - Rru_A0621 0.76 -2.0
737,940 - Rru_A0621 0.76 -2.0
737,940 - Rru_A0621 0.76 -2.9
737,940 - Rru_A0621 0.76 -1.6
738,033 - Rru_A0621 0.78 -0.0
738,057 + Rru_A0621 0.79 -0.0
738,057 + Rru_A0621 0.79 -0.0
738,058 - Rru_A0621 0.79 -2.8
738,058 - Rru_A0621 0.79 -3.0
738,059 + Rru_A0621 0.79 -3.5
738,059 + Rru_A0621 0.79 -0.0
738,162 - Rru_A0621 0.82 +1.0
738,162 - Rru_A0621 0.82 -0.0
738,162 - Rru_A0621 0.82 -2.0
738,265 - Rru_A0621 0.85 -0.0
738,265 - Rru_A0621 0.85 -0.0
738,317 + Rru_A0621 0.86 -0.0
738,318 - Rru_A0621 0.86 -0.0
738,591 + -0.0
738,591 + -2.6
738,591 + -2.8
738,591 + -0.0
738,592 - -3.3
738,713 - -0.0
738,837 + -1.8
738,837 + -0.6
738,838 - -2.6
739,328 - Rru_A0622 0.32 -0.0
739,398 + Rru_A0622 0.36 -2.1
739,398 + Rru_A0622 0.36 -2.0
739,399 - Rru_A0622 0.36 -2.3
739,462 - Rru_A0622 0.40 -1.8
739,473 + Rru_A0622 0.40 -2.4
739,473 + Rru_A0622 0.40 -0.0
739,473 + Rru_A0622 0.40 -0.0
739,473 + Rru_A0622 0.40 -2.7
739,473 + Rru_A0622 0.40 -0.0
739,473 + Rru_A0622 0.40 -4.0
739,473 + Rru_A0622 0.40 -3.2
739,473 + Rru_A0622 0.40 -2.7
739,474 - Rru_A0622 0.41 -2.7
739,474 - Rru_A0622 0.41 -0.4
739,474 - Rru_A0622 0.41 -0.0
739,474 - Rru_A0622 0.41 -0.0
739,474 - Rru_A0622 0.41 -2.0
739,581 + Rru_A0622 0.47 -2.6

Or see this region's nucleotide sequence