Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0620

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0618 and Rru_A0619 overlap by 13 nucleotidesRru_A0619 and Rru_A0620 overlap by 1 nucleotidesRru_A0620 and Rru_A0621 are separated by 34 nucleotides Rru_A0618: Rru_A0618 - PUCC protein (NCBI), at 732,044 to 733,486 _A0618 Rru_A0619: Rru_A0619 - Magnesium protoporphyrin O-methyltransferase (NCBI), at 733,474 to 734,184 _A0619 Rru_A0620: Rru_A0620 - Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (NCBI), at 734,184 to 735,071 _A0620 Rru_A0621: Rru_A0621 - Magnesium-chelatase, subunit H (NCBI), at 735,106 to 738,834 _A0621 Position (kb) 734 735 736Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 733.518 kb on - strandat 733.518 kb on - strandat 733.518 kb on - strandat 733.518 kb on - strandat 733.770 kb on - strand, within Rru_A0619at 733.770 kb on - strand, within Rru_A0619at 733.914 kb on + strand, within Rru_A0619at 734.139 kb on - strandat 734.168 kb on + strandat 734.168 kb on + strandat 734.168 kb on + strandat 734.168 kb on + strandat 734.169 kb on - strandat 734.169 kb on - strandat 734.220 kb on + strandat 734.221 kb on - strandat 734.221 kb on - strandat 734.281 kb on + strand, within Rru_A0620at 734.282 kb on - strand, within Rru_A0620at 734.476 kb on + strand, within Rru_A0620at 734.476 kb on + strand, within Rru_A0620at 734.476 kb on + strand, within Rru_A0620at 734.476 kb on + strand, within Rru_A0620at 734.692 kb on + strand, within Rru_A0620at 734.692 kb on + strand, within Rru_A0620at 734.752 kb on + strand, within Rru_A0620at 734.753 kb on - strand, within Rru_A0620at 734.753 kb on - strand, within Rru_A0620at 734.753 kb on - strand, within Rru_A0620at 734.753 kb on - strand, within Rru_A0620at 734.968 kb on + strand, within Rru_A0620at 734.968 kb on + strand, within Rru_A0620at 734.968 kb on + strand, within Rru_A0620at 734.968 kb on + strand, within Rru_A0620at 734.969 kb on - strand, within Rru_A0620at 735.074 kb on + strandat 735.075 kb on - strandat 735.075 kb on - strandat 735.075 kb on - strandat 735.078 kb on + strandat 735.078 kb on + strandat 735.078 kb on + strandat 735.079 kb on - strandat 735.127 kb on + strandat 735.127 kb on + strandat 735.203 kb on + strandat 735.203 kb on + strandat 735.203 kb on + strandat 735.203 kb on + strandat 735.321 kb on + strandat 735.322 kb on - strandat 735.322 kb on - strandat 735.323 kb on + strandat 735.407 kb on + strandat 735.408 kb on - strandat 735.431 kb on + strandat 735.527 kb on + strand, within Rru_A0621at 735.528 kb on - strand, within Rru_A0621at 735.528 kb on - strand, within Rru_A0621at 735.528 kb on - strand, within Rru_A0621at 735.528 kb on - strand, within Rru_A0621at 735.528 kb on - strand, within Rru_A0621at 735.593 kb on + strand, within Rru_A0621at 735.713 kb on + strand, within Rru_A0621at 735.806 kb on + strand, within Rru_A0621at 735.807 kb on - strand, within Rru_A0621at 735.873 kb on + strand, within Rru_A0621at 735.873 kb on + strand, within Rru_A0621at 735.874 kb on - strand, within Rru_A0621at 735.874 kb on - strand, within Rru_A0621at 735.874 kb on - strand, within Rru_A0621at 735.875 kb on + strand, within Rru_A0621at 735.876 kb on - strand, within Rru_A0621at 735.876 kb on - strand, within Rru_A0621at 735.876 kb on - strand, within Rru_A0621at 735.899 kb on + strand, within Rru_A0621at 735.899 kb on + strand, within Rru_A0621at 735.900 kb on - strand, within Rru_A0621at 735.900 kb on - strand, within Rru_A0621

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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733,518 - -0.0
733,518 - -2.8
733,518 - -0.0
733,518 - -0.0
733,770 - Rru_A0619 0.42 -0.0
733,770 - Rru_A0619 0.42 -0.0
733,914 + Rru_A0619 0.62 -1.0
734,139 - -3.3
734,168 + -1.0
734,168 + -0.0
734,168 + -0.0
734,168 + -2.6
734,169 - -0.0
734,169 - -0.0
734,220 + -0.0
734,221 - -0.0
734,221 - -1.6
734,281 + Rru_A0620 0.11 -3.3
734,282 - Rru_A0620 0.11 -3.0
734,476 + Rru_A0620 0.33 -3.0
734,476 + Rru_A0620 0.33 -0.0
734,476 + Rru_A0620 0.33 -1.6
734,476 + Rru_A0620 0.33 -0.0
734,692 + Rru_A0620 0.57 -1.6
734,692 + Rru_A0620 0.57 -0.0
734,752 + Rru_A0620 0.64 -0.0
734,753 - Rru_A0620 0.64 -4.6
734,753 - Rru_A0620 0.64 -0.0
734,753 - Rru_A0620 0.64 -2.0
734,753 - Rru_A0620 0.64 -0.0
734,968 + Rru_A0620 0.88 -0.0
734,968 + Rru_A0620 0.88 -2.5
734,968 + Rru_A0620 0.88 -0.0
734,968 + Rru_A0620 0.88 -2.3
734,969 - Rru_A0620 0.88 -0.0
735,074 + -2.0
735,075 - -0.0
735,075 - -0.0
735,075 - -0.0
735,078 + -0.0
735,078 + -0.0
735,078 + -0.0
735,079 - -1.2
735,127 + -2.0
735,127 + -0.0
735,203 + -1.0
735,203 + -1.0
735,203 + -2.8
735,203 + -2.2
735,321 + -2.5
735,322 - -0.0
735,322 - -1.0
735,323 + -0.0
735,407 + -0.0
735,408 - -0.0
735,431 + -2.0
735,527 + Rru_A0621 0.11 -0.0
735,528 - Rru_A0621 0.11 -1.9
735,528 - Rru_A0621 0.11 -1.0
735,528 - Rru_A0621 0.11 -0.0
735,528 - Rru_A0621 0.11 -0.0
735,528 - Rru_A0621 0.11 -0.0
735,593 + Rru_A0621 0.13 -0.0
735,713 + Rru_A0621 0.16 -3.8
735,806 + Rru_A0621 0.19 -0.0
735,807 - Rru_A0621 0.19 -0.0
735,873 + Rru_A0621 0.21 -3.1
735,873 + Rru_A0621 0.21 -0.0
735,874 - Rru_A0621 0.21 -0.0
735,874 - Rru_A0621 0.21 -2.3
735,874 - Rru_A0621 0.21 -0.4
735,875 + Rru_A0621 0.21 -0.0
735,876 - Rru_A0621 0.21 -2.3
735,876 - Rru_A0621 0.21 -0.0
735,876 - Rru_A0621 0.21 -0.0
735,899 + Rru_A0621 0.21 -0.0
735,899 + Rru_A0621 0.21 -2.5
735,900 - Rru_A0621 0.21 -0.2
735,900 - Rru_A0621 0.21 -0.0

Or see this region's nucleotide sequence