Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0618

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0616 and Rru_A0617 are separated by 15 nucleotidesRru_A0617 and Rru_A0618 are separated by 25 nucleotidesRru_A0618 and Rru_A0619 overlap by 13 nucleotidesRru_A0619 and Rru_A0620 overlap by 1 nucleotides Rru_A0616: Rru_A0616 - photosynthetic complex assembly protein (NCBI), at 730,555 to 731,229 _A0616 Rru_A0617: Rru_A0617 - Photosynthetic reaction center, H-chain (NCBI), at 731,245 to 732,018 _A0617 Rru_A0618: Rru_A0618 - PUCC protein (NCBI), at 732,044 to 733,486 _A0618 Rru_A0619: Rru_A0619 - Magnesium protoporphyrin O-methyltransferase (NCBI), at 733,474 to 734,184 _A0619 Rru_A0620: Rru_A0620 - Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (NCBI), at 734,184 to 735,071 _A0620 Position (kb) 732 733 734Strain fitness (log2 ratio) -3 -2 -1 0 1at 731.051 kb on + strand, within Rru_A0616at 731.051 kb on + strand, within Rru_A0616at 731.052 kb on - strand, within Rru_A0616at 731.093 kb on + strand, within Rru_A0616at 731.246 kb on + strandat 731.247 kb on - strandat 731.247 kb on - strandat 731.279 kb on + strandat 731.279 kb on + strandat 731.282 kb on + strandat 731.283 kb on - strandat 731.792 kb on + strand, within Rru_A0617at 731.793 kb on - strand, within Rru_A0617at 731.930 kb on + strand, within Rru_A0617at 731.931 kb on - strand, within Rru_A0617at 731.931 kb on - strand, within Rru_A0617at 731.993 kb on + strandat 731.993 kb on + strandat 732.012 kb on + strandat 732.013 kb on - strandat 732.013 kb on - strandat 732.013 kb on - strandat 732.045 kb on + strandat 732.046 kb on - strandat 732.142 kb on + strandat 732.142 kb on + strandat 732.142 kb on + strandat 732.142 kb on + strandat 732.162 kb on - strandat 732.162 kb on - strandat 732.630 kb on + strand, within Rru_A0618at 732.630 kb on + strand, within Rru_A0618at 732.631 kb on - strand, within Rru_A0618at 732.631 kb on - strand, within Rru_A0618at 732.936 kb on + strand, within Rru_A0618at 732.936 kb on + strand, within Rru_A0618at 732.936 kb on + strand, within Rru_A0618at 732.937 kb on - strand, within Rru_A0618at 732.937 kb on - strand, within Rru_A0618at 732.937 kb on - strand, within Rru_A0618at 733.168 kb on + strand, within Rru_A0618at 733.168 kb on + strand, within Rru_A0618at 733.168 kb on + strand, within Rru_A0618at 733.168 kb on + strand, within Rru_A0618at 733.168 kb on + strand, within Rru_A0618at 733.168 kb on + strand, within Rru_A0618at 733.168 kb on + strand, within Rru_A0618at 733.169 kb on - strand, within Rru_A0618at 733.169 kb on - strand, within Rru_A0618at 733.169 kb on - strand, within Rru_A0618at 733.169 kb on - strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.171 kb on - strand, within Rru_A0618at 733.171 kb on - strand, within Rru_A0618at 733.171 kb on - strand, within Rru_A0618at 733.171 kb on - strand, within Rru_A0618at 733.171 kb on - strand, within Rru_A0618at 733.171 kb on - strand, within Rru_A0618at 733.171 kb on - strand, within Rru_A0618at 733.171 kb on - strand, within Rru_A0618at 733.171 kb on - strand, within Rru_A0618at 733.518 kb on - strandat 733.518 kb on - strandat 733.518 kb on - strandat 733.518 kb on - strandat 733.770 kb on - strand, within Rru_A0619at 733.770 kb on - strand, within Rru_A0619at 733.914 kb on + strand, within Rru_A0619at 734.139 kb on - strandat 734.168 kb on + strandat 734.168 kb on + strandat 734.168 kb on + strandat 734.168 kb on + strandat 734.169 kb on - strandat 734.169 kb on - strandat 734.220 kb on + strandat 734.221 kb on - strandat 734.221 kb on - strandat 734.281 kb on + strand, within Rru_A0620at 734.282 kb on - strand, within Rru_A0620at 734.476 kb on + strand, within Rru_A0620at 734.476 kb on + strand, within Rru_A0620at 734.476 kb on + strand, within Rru_A0620at 734.476 kb on + strand, within Rru_A0620

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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731,051 + Rru_A0616 0.73 -0.0
731,051 + Rru_A0616 0.73 -0.0
731,052 - Rru_A0616 0.74 -1.0
731,093 + Rru_A0616 0.80 -0.0
731,246 + -0.0
731,247 - -2.0
731,247 - -0.0
731,279 + -0.0
731,279 + -1.0
731,282 + -0.0
731,283 - -0.0
731,792 + Rru_A0617 0.71 -2.1
731,793 - Rru_A0617 0.71 -1.6
731,930 + Rru_A0617 0.89 -0.0
731,931 - Rru_A0617 0.89 -0.0
731,931 - Rru_A0617 0.89 -1.0
731,993 + -2.6
731,993 + -1.6
732,012 + -0.0
732,013 - -0.0
732,013 - -0.5
732,013 - -0.0
732,045 + -1.0
732,046 - -1.0
732,142 + -3.1
732,142 + -3.4
732,142 + -0.0
732,142 + -2.9
732,162 - -0.0
732,162 - -0.7
732,630 + Rru_A0618 0.41 -0.0
732,630 + Rru_A0618 0.41 -1.9
732,631 - Rru_A0618 0.41 -0.9
732,631 - Rru_A0618 0.41 -1.0
732,936 + Rru_A0618 0.62 -0.0
732,936 + Rru_A0618 0.62 -0.0
732,936 + Rru_A0618 0.62 -0.0
732,937 - Rru_A0618 0.62 +0.3
732,937 - Rru_A0618 0.62 -1.7
732,937 - Rru_A0618 0.62 -0.0
733,168 + Rru_A0618 0.78 -2.1
733,168 + Rru_A0618 0.78 -0.0
733,168 + Rru_A0618 0.78 -2.1
733,168 + Rru_A0618 0.78 -0.0
733,168 + Rru_A0618 0.78 -1.9
733,168 + Rru_A0618 0.78 -1.7
733,168 + Rru_A0618 0.78 +1.6
733,169 - Rru_A0618 0.78 -0.0
733,169 - Rru_A0618 0.78 -2.1
733,169 - Rru_A0618 0.78 -0.0
733,169 - Rru_A0618 0.78 -3.5
733,170 + Rru_A0618 0.78 -1.6
733,170 + Rru_A0618 0.78 -0.0
733,170 + Rru_A0618 0.78 -1.5
733,170 + Rru_A0618 0.78 -0.0
733,170 + Rru_A0618 0.78 -0.0
733,170 + Rru_A0618 0.78 -3.0
733,170 + Rru_A0618 0.78 -0.0
733,170 + Rru_A0618 0.78 -1.9
733,170 + Rru_A0618 0.78 -2.1
733,170 + Rru_A0618 0.78 -0.0
733,170 + Rru_A0618 0.78 -0.0
733,171 - Rru_A0618 0.78 -0.0
733,171 - Rru_A0618 0.78 -3.0
733,171 - Rru_A0618 0.78 -0.0
733,171 - Rru_A0618 0.78 -0.0
733,171 - Rru_A0618 0.78 -0.0
733,171 - Rru_A0618 0.78 -0.0
733,171 - Rru_A0618 0.78 -1.4
733,171 - Rru_A0618 0.78 -3.6
733,171 - Rru_A0618 0.78 -1.6
733,518 - -0.0
733,518 - -2.8
733,518 - -0.0
733,518 - -0.0
733,770 - Rru_A0619 0.42 -0.0
733,770 - Rru_A0619 0.42 -0.0
733,914 + Rru_A0619 0.62 -1.0
734,139 - -3.3
734,168 + -1.0
734,168 + -0.0
734,168 + -0.0
734,168 + -2.6
734,169 - -0.0
734,169 - -0.0
734,220 + -0.0
734,221 - -0.0
734,221 - -1.6
734,281 + Rru_A0620 0.11 -3.3
734,282 - Rru_A0620 0.11 -3.0
734,476 + Rru_A0620 0.33 -3.0
734,476 + Rru_A0620 0.33 -0.0
734,476 + Rru_A0620 0.33 -1.6
734,476 + Rru_A0620 0.33 -0.0

Or see this region's nucleotide sequence