Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0614

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0613 and Rru_A0614 are separated by 38 nucleotidesRru_A0614 and Rru_A0615 are separated by 237 nucleotidesRru_A0615 and Rru_A0616 are separated by 40 nucleotides Rru_A0613: Rru_A0613 - Bacteriochlorophyll 4-vinyl reductase (NCBI), at 728,248 to 728,883 _A0613 Rru_A0614: Rru_A0614 - hypothetical protein (NCBI), at 728,922 to 729,809 _A0614 Rru_A0615: Rru_A0615 - photosynthetic complex assembly protein (NCBI), at 730,047 to 730,514 _A0615 Rru_A0616: Rru_A0616 - photosynthetic complex assembly protein (NCBI), at 730,555 to 731,229 _A0616 Position (kb) 728 729 730Strain fitness (log2 ratio) -3 -2 -1 0 1at 728.100 kb on - strandat 728.144 kb on + strandat 728.384 kb on + strand, within Rru_A0613at 728.387 kb on + strand, within Rru_A0613at 728.387 kb on + strand, within Rru_A0613at 728.387 kb on + strand, within Rru_A0613at 728.606 kb on + strand, within Rru_A0613at 728.738 kb on + strand, within Rru_A0613at 728.739 kb on - strand, within Rru_A0613at 728.941 kb on - strandat 729.067 kb on + strand, within Rru_A0614at 729.067 kb on + strand, within Rru_A0614at 729.067 kb on + strand, within Rru_A0614at 729.067 kb on + strand, within Rru_A0614at 729.078 kb on + strand, within Rru_A0614at 729.078 kb on + strand, within Rru_A0614at 729.105 kb on + strand, within Rru_A0614at 729.290 kb on + strand, within Rru_A0614at 729.291 kb on - strand, within Rru_A0614at 729.291 kb on - strand, within Rru_A0614at 729.291 kb on - strand, within Rru_A0614at 729.462 kb on + strand, within Rru_A0614at 729.462 kb on + strand, within Rru_A0614at 729.463 kb on - strand, within Rru_A0614at 729.565 kb on + strand, within Rru_A0614at 729.565 kb on + strand, within Rru_A0614at 729.565 kb on + strand, within Rru_A0614at 729.565 kb on + strand, within Rru_A0614at 729.565 kb on + strand, within Rru_A0614at 729.566 kb on - strand, within Rru_A0614at 729.566 kb on - strand, within Rru_A0614at 729.566 kb on - strand, within Rru_A0614at 729.619 kb on + strand, within Rru_A0614at 729.619 kb on + strand, within Rru_A0614at 729.620 kb on - strand, within Rru_A0614at 729.716 kb on + strand, within Rru_A0614at 729.717 kb on - strand, within Rru_A0614at 729.779 kb on + strandat 729.779 kb on + strandat 729.779 kb on + strandat 729.779 kb on + strandat 729.779 kb on + strandat 729.779 kb on + strandat 729.779 kb on + strandat 729.780 kb on - strandat 729.780 kb on - strandat 729.780 kb on - strandat 729.780 kb on - strandat 729.780 kb on - strandat 729.781 kb on + strandat 729.782 kb on - strandat 730.048 kb on + strandat 730.049 kb on - strandat 730.081 kb on + strandat 730.082 kb on - strandat 730.195 kb on + strand, within Rru_A0615at 730.268 kb on + strand, within Rru_A0615at 730.269 kb on - strand, within Rru_A0615at 730.269 kb on - strand, within Rru_A0615at 730.488 kb on + strandat 730.488 kb on + strandat 730.489 kb on - strandat 730.656 kb on + strand, within Rru_A0616at 730.656 kb on + strand, within Rru_A0616at 730.656 kb on + strand, within Rru_A0616at 730.656 kb on + strand, within Rru_A0616at 730.658 kb on + strand, within Rru_A0616at 730.658 kb on + strand, within Rru_A0616at 730.658 kb on + strand, within Rru_A0616at 730.658 kb on + strand, within Rru_A0616at 730.659 kb on - strand, within Rru_A0616at 730.659 kb on - strand, within Rru_A0616at 730.735 kb on - strand, within Rru_A0616at 730.775 kb on + strand, within Rru_A0616at 730.776 kb on - strand, within Rru_A0616at 730.776 kb on - strand, within Rru_A0616

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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728,100 - -0.0
728,144 + -0.0
728,384 + Rru_A0613 0.21 -2.0
728,387 + Rru_A0613 0.22 -0.0
728,387 + Rru_A0613 0.22 -2.3
728,387 + Rru_A0613 0.22 -0.0
728,606 + Rru_A0613 0.56 -1.0
728,738 + Rru_A0613 0.77 -0.0
728,739 - Rru_A0613 0.77 -0.0
728,941 - -0.0
729,067 + Rru_A0614 0.16 -0.0
729,067 + Rru_A0614 0.16 +0.0
729,067 + Rru_A0614 0.16 -0.0
729,067 + Rru_A0614 0.16 -0.3
729,078 + Rru_A0614 0.18 -0.0
729,078 + Rru_A0614 0.18 -0.0
729,105 + Rru_A0614 0.21 -0.0
729,290 + Rru_A0614 0.41 -1.0
729,291 - Rru_A0614 0.42 -0.0
729,291 - Rru_A0614 0.42 -0.0
729,291 - Rru_A0614 0.42 -0.0
729,462 + Rru_A0614 0.61 -2.8
729,462 + Rru_A0614 0.61 +1.1
729,463 - Rru_A0614 0.61 -1.2
729,565 + Rru_A0614 0.72 -0.0
729,565 + Rru_A0614 0.72 -0.0
729,565 + Rru_A0614 0.72 -0.0
729,565 + Rru_A0614 0.72 -0.0
729,565 + Rru_A0614 0.72 -0.0
729,566 - Rru_A0614 0.73 -2.5
729,566 - Rru_A0614 0.73 -0.0
729,566 - Rru_A0614 0.73 -1.4
729,619 + Rru_A0614 0.78 -2.5
729,619 + Rru_A0614 0.78 -0.0
729,620 - Rru_A0614 0.79 -2.0
729,716 + Rru_A0614 0.89 -1.9
729,717 - Rru_A0614 0.90 -1.0
729,779 + -0.0
729,779 + -1.8
729,779 + -1.0
729,779 + -0.0
729,779 + -2.3
729,779 + -0.0
729,779 + -0.0
729,780 - -2.7
729,780 - -1.2
729,780 - -0.0
729,780 - -2.5
729,780 - -1.0
729,781 + -0.0
729,782 - -0.0
730,048 + -0.5
730,049 - -0.0
730,081 + -1.8
730,082 - -3.0
730,195 + Rru_A0615 0.32 -1.4
730,268 + Rru_A0615 0.47 -0.0
730,269 - Rru_A0615 0.47 -0.3
730,269 - Rru_A0615 0.47 -0.0
730,488 + -0.0
730,488 + -2.6
730,489 - -2.8
730,656 + Rru_A0616 0.15 -2.8
730,656 + Rru_A0616 0.15 -2.9
730,656 + Rru_A0616 0.15 -0.0
730,656 + Rru_A0616 0.15 -0.3
730,658 + Rru_A0616 0.15 -0.4
730,658 + Rru_A0616 0.15 -1.0
730,658 + Rru_A0616 0.15 -0.6
730,658 + Rru_A0616 0.15 -1.1
730,659 - Rru_A0616 0.15 -0.0
730,659 - Rru_A0616 0.15 +0.3
730,735 - Rru_A0616 0.27 -1.0
730,775 + Rru_A0616 0.33 -0.0
730,776 - Rru_A0616 0.33 -0.0
730,776 - Rru_A0616 0.33 -1.6

Or see this region's nucleotide sequence