Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0613

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0612 and Rru_A0613 are separated by 335 nucleotidesRru_A0613 and Rru_A0614 are separated by 38 nucleotides Rru_A0612: Rru_A0612 - Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI), at 724,727 to 727,912 _A0612 Rru_A0613: Rru_A0613 - Bacteriochlorophyll 4-vinyl reductase (NCBI), at 728,248 to 728,883 _A0613 Rru_A0614: Rru_A0614 - hypothetical protein (NCBI), at 728,922 to 729,809 _A0614 Position (kb) 728 729Strain fitness (log2 ratio) -3 -2 -1 0 1at 727.796 kb on - strandat 727.796 kb on - strandat 727.796 kb on - strandat 727.879 kb on + strandat 728.100 kb on - strandat 728.144 kb on + strandat 728.384 kb on + strand, within Rru_A0613at 728.387 kb on + strand, within Rru_A0613at 728.387 kb on + strand, within Rru_A0613at 728.387 kb on + strand, within Rru_A0613at 728.606 kb on + strand, within Rru_A0613at 728.738 kb on + strand, within Rru_A0613at 728.739 kb on - strand, within Rru_A0613at 728.941 kb on - strandat 729.067 kb on + strand, within Rru_A0614at 729.067 kb on + strand, within Rru_A0614at 729.067 kb on + strand, within Rru_A0614at 729.067 kb on + strand, within Rru_A0614at 729.078 kb on + strand, within Rru_A0614at 729.078 kb on + strand, within Rru_A0614at 729.105 kb on + strand, within Rru_A0614at 729.290 kb on + strand, within Rru_A0614at 729.291 kb on - strand, within Rru_A0614at 729.291 kb on - strand, within Rru_A0614at 729.291 kb on - strand, within Rru_A0614at 729.462 kb on + strand, within Rru_A0614at 729.462 kb on + strand, within Rru_A0614at 729.463 kb on - strand, within Rru_A0614at 729.565 kb on + strand, within Rru_A0614at 729.565 kb on + strand, within Rru_A0614at 729.565 kb on + strand, within Rru_A0614at 729.565 kb on + strand, within Rru_A0614at 729.565 kb on + strand, within Rru_A0614at 729.566 kb on - strand, within Rru_A0614at 729.566 kb on - strand, within Rru_A0614at 729.566 kb on - strand, within Rru_A0614at 729.619 kb on + strand, within Rru_A0614at 729.619 kb on + strand, within Rru_A0614at 729.620 kb on - strand, within Rru_A0614at 729.716 kb on + strand, within Rru_A0614at 729.717 kb on - strand, within Rru_A0614at 729.779 kb on + strandat 729.779 kb on + strandat 729.779 kb on + strandat 729.779 kb on + strandat 729.779 kb on + strandat 729.779 kb on + strandat 729.779 kb on + strandat 729.780 kb on - strandat 729.780 kb on - strandat 729.780 kb on - strandat 729.780 kb on - strandat 729.780 kb on - strandat 729.781 kb on + strandat 729.782 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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727,796 - -0.0
727,796 - +0.5
727,796 - -0.0
727,879 + +1.7
728,100 - -0.0
728,144 + -0.0
728,384 + Rru_A0613 0.21 -2.0
728,387 + Rru_A0613 0.22 -0.0
728,387 + Rru_A0613 0.22 -2.3
728,387 + Rru_A0613 0.22 -0.0
728,606 + Rru_A0613 0.56 -1.0
728,738 + Rru_A0613 0.77 -0.0
728,739 - Rru_A0613 0.77 -0.0
728,941 - -0.0
729,067 + Rru_A0614 0.16 -0.0
729,067 + Rru_A0614 0.16 +0.0
729,067 + Rru_A0614 0.16 -0.0
729,067 + Rru_A0614 0.16 -0.3
729,078 + Rru_A0614 0.18 -0.0
729,078 + Rru_A0614 0.18 -0.0
729,105 + Rru_A0614 0.21 -0.0
729,290 + Rru_A0614 0.41 -1.0
729,291 - Rru_A0614 0.42 -0.0
729,291 - Rru_A0614 0.42 -0.0
729,291 - Rru_A0614 0.42 -0.0
729,462 + Rru_A0614 0.61 -2.8
729,462 + Rru_A0614 0.61 +1.1
729,463 - Rru_A0614 0.61 -1.2
729,565 + Rru_A0614 0.72 -0.0
729,565 + Rru_A0614 0.72 -0.0
729,565 + Rru_A0614 0.72 -0.0
729,565 + Rru_A0614 0.72 -0.0
729,565 + Rru_A0614 0.72 -0.0
729,566 - Rru_A0614 0.73 -2.5
729,566 - Rru_A0614 0.73 -0.0
729,566 - Rru_A0614 0.73 -1.4
729,619 + Rru_A0614 0.78 -2.5
729,619 + Rru_A0614 0.78 -0.0
729,620 - Rru_A0614 0.79 -2.0
729,716 + Rru_A0614 0.89 -1.9
729,717 - Rru_A0614 0.90 -1.0
729,779 + -0.0
729,779 + -1.8
729,779 + -1.0
729,779 + -0.0
729,779 + -2.3
729,779 + -0.0
729,779 + -0.0
729,780 - -2.7
729,780 - -1.2
729,780 - -0.0
729,780 - -2.5
729,780 - -1.0
729,781 + -0.0
729,782 - -0.0

Or see this region's nucleotide sequence