Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0608

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0606 and Rru_A0607 are separated by 38 nucleotidesRru_A0607 and Rru_A0608 are separated by 218 nucleotidesRru_A0608 and Rru_A0609 are separated by 147 nucleotidesRru_A0609 and Rru_A0610 are separated by 108 nucleotides Rru_A0606: Rru_A0606 - Transcriptional Regulator, LysR family (NCBI), at 718,445 to 719,353 _A0606 Rru_A0607: Rru_A0607 - Adenine phosphoribosyl transferase (NCBI), at 719,392 to 719,907 _A0607 Rru_A0608: Rru_A0608 - TRAP transporter solute receptor, TAXI family (NCBI), at 720,126 to 721,106 _A0608 Rru_A0609: Rru_A0609 - UspA (NCBI), at 721,254 to 721,682 _A0609 Rru_A0610: Rru_A0610 - hypothetical protein (NCBI), at 721,791 to 722,924 _A0610 Position (kb) 720 721 722Strain fitness (log2 ratio) -1 0 1at 719.633 kb on + strand, within Rru_A0607at 719.634 kb on - strand, within Rru_A0607at 719.634 kb on - strand, within Rru_A0607at 719.847 kb on - strand, within Rru_A0607at 719.890 kb on - strandat 719.947 kb on + strandat 719.947 kb on + strandat 720.255 kb on + strand, within Rru_A0608at 720.255 kb on + strand, within Rru_A0608at 720.255 kb on + strand, within Rru_A0608at 720.255 kb on + strand, within Rru_A0608at 720.442 kb on - strand, within Rru_A0608at 720.720 kb on + strand, within Rru_A0608at 720.720 kb on + strand, within Rru_A0608at 720.720 kb on + strand, within Rru_A0608at 720.720 kb on + strand, within Rru_A0608at 720.721 kb on - strand, within Rru_A0608at 720.721 kb on - strand, within Rru_A0608at 720.721 kb on - strand, within Rru_A0608at 720.721 kb on - strand, within Rru_A0608at 720.834 kb on + strand, within Rru_A0608at 720.834 kb on + strand, within Rru_A0608at 720.834 kb on + strand, within Rru_A0608at 720.834 kb on + strand, within Rru_A0608at 720.835 kb on - strand, within Rru_A0608at 720.864 kb on + strand, within Rru_A0608at 720.884 kb on + strand, within Rru_A0608at 720.948 kb on + strand, within Rru_A0608at 720.948 kb on + strand, within Rru_A0608at 720.948 kb on + strand, within Rru_A0608at 720.949 kb on - strand, within Rru_A0608at 721.075 kb on + strandat 721.075 kb on + strandat 721.076 kb on - strandat 721.076 kb on - strandat 721.076 kb on - strandat 721.081 kb on - strandat 721.081 kb on - strandat 721.100 kb on - strandat 721.134 kb on - strandat 721.257 kb on + strandat 721.257 kb on + strandat 721.257 kb on + strandat 721.258 kb on - strandat 721.258 kb on - strandat 721.258 kb on - strandat 721.258 kb on - strandat 721.258 kb on - strandat 721.258 kb on - strandat 721.258 kb on - strandat 721.258 kb on - strandat 721.258 kb on - strandat 721.259 kb on + strandat 721.259 kb on + strandat 721.260 kb on - strandat 721.260 kb on - strandat 721.310 kb on + strand, within Rru_A0609at 721.311 kb on - strand, within Rru_A0609at 721.311 kb on - strand, within Rru_A0609at 721.311 kb on - strand, within Rru_A0609at 721.311 kb on - strand, within Rru_A0609at 721.367 kb on + strand, within Rru_A0609at 721.367 kb on + strand, within Rru_A0609at 721.368 kb on - strand, within Rru_A0609at 721.508 kb on + strand, within Rru_A0609at 721.508 kb on + strand, within Rru_A0609at 721.508 kb on + strand, within Rru_A0609at 721.508 kb on + strand, within Rru_A0609at 721.509 kb on - strand, within Rru_A0609at 721.513 kb on + strand, within Rru_A0609at 721.514 kb on - strand, within Rru_A0609at 721.530 kb on + strand, within Rru_A0609at 721.680 kb on + strandat 721.681 kb on - strandat 721.681 kb on - strandat 721.732 kb on - strandat 721.735 kb on + strandat 721.736 kb on - strandat 721.736 kb on - strandat 721.736 kb on - strandat 721.760 kb on - strandat 721.760 kb on - strandat 721.787 kb on + strandat 721.787 kb on + strandat 721.787 kb on + strandat 721.787 kb on + strandat 721.787 kb on + strandat 721.787 kb on + strandat 721.787 kb on + strandat 721.788 kb on - strandat 721.788 kb on - strandat 721.788 kb on - strandat 721.788 kb on - strandat 721.788 kb on - strandat 721.788 kb on - strandat 721.788 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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719,633 + Rru_A0607 0.47 -0.0
719,634 - Rru_A0607 0.47 -0.0
719,634 - Rru_A0607 0.47 +1.2
719,847 - Rru_A0607 0.88 -0.0
719,890 - +1.1
719,947 + +1.3
719,947 + +1.0
720,255 + Rru_A0608 0.13 -0.0
720,255 + Rru_A0608 0.13 -0.0
720,255 + Rru_A0608 0.13 +0.2
720,255 + Rru_A0608 0.13 -0.0
720,442 - Rru_A0608 0.32 -0.2
720,720 + Rru_A0608 0.61 -0.0
720,720 + Rru_A0608 0.61 +0.0
720,720 + Rru_A0608 0.61 -0.0
720,720 + Rru_A0608 0.61 -0.0
720,721 - Rru_A0608 0.61 -0.0
720,721 - Rru_A0608 0.61 -0.3
720,721 - Rru_A0608 0.61 +0.2
720,721 - Rru_A0608 0.61 -0.0
720,834 + Rru_A0608 0.72 -1.6
720,834 + Rru_A0608 0.72 -0.0
720,834 + Rru_A0608 0.72 -0.0
720,834 + Rru_A0608 0.72 -0.0
720,835 - Rru_A0608 0.72 -0.0
720,864 + Rru_A0608 0.75 -0.0
720,884 + Rru_A0608 0.77 -0.0
720,948 + Rru_A0608 0.84 -0.0
720,948 + Rru_A0608 0.84 -1.6
720,948 + Rru_A0608 0.84 +0.5
720,949 - Rru_A0608 0.84 -0.0
721,075 + -0.1
721,075 + +0.2
721,076 - -1.1
721,076 - +0.6
721,076 - +0.1
721,081 - +1.0
721,081 - -0.0
721,100 - -0.0
721,134 - +1.0
721,257 + -1.0
721,257 + -0.2
721,257 + +0.5
721,258 - +0.1
721,258 - -0.0
721,258 - +1.3
721,258 - +0.2
721,258 - -1.0
721,258 - -0.0
721,258 - -0.4
721,258 - -0.4
721,258 - -0.0
721,259 + +1.0
721,259 + -0.0
721,260 - -0.0
721,260 - -0.0
721,310 + Rru_A0609 0.13 -0.6
721,311 - Rru_A0609 0.13 +0.4
721,311 - Rru_A0609 0.13 +1.0
721,311 - Rru_A0609 0.13 +0.5
721,311 - Rru_A0609 0.13 +1.1
721,367 + Rru_A0609 0.26 +1.1
721,367 + Rru_A0609 0.26 +0.2
721,368 - Rru_A0609 0.27 -0.0
721,508 + Rru_A0609 0.59 -0.0
721,508 + Rru_A0609 0.59 -0.0
721,508 + Rru_A0609 0.59 -0.0
721,508 + Rru_A0609 0.59 +0.3
721,509 - Rru_A0609 0.59 -0.0
721,513 + Rru_A0609 0.60 -1.0
721,514 - Rru_A0609 0.61 +0.3
721,530 + Rru_A0609 0.64 -0.0
721,680 + -0.0
721,681 - -0.0
721,681 - -0.0
721,732 - -1.0
721,735 + -0.1
721,736 - -0.6
721,736 - -0.0
721,736 - -0.0
721,760 - -0.0
721,760 - -1.0
721,787 + +1.0
721,787 + -0.0
721,787 + -1.3
721,787 + -0.0
721,787 + -0.4
721,787 + -0.0
721,787 + -0.0
721,788 - -0.0
721,788 - +1.4
721,788 - -0.4
721,788 - +0.6
721,788 - -0.0
721,788 - -0.1
721,788 - -0.0

Or see this region's nucleotide sequence