Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0563

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0561 and Rru_A0562 are separated by 61 nucleotidesRru_A0562 and Rru_A0563 overlap by 4 nucleotidesRru_A0563 and Rru_A0564 are separated by 188 nucleotides Rru_A0561: Rru_A0561 - Cytochrome bd ubiquinol oxidase, subunit II (NCBI), at 663,607 to 664,608 _A0561 Rru_A0562: Rru_A0562 - Peptidase S1 and S6, chymotrypsin/Hap (NCBI), at 664,670 to 665,590 _A0562 Rru_A0563: Rru_A0563 - Twin-arginine translocation pathway signal (NCBI), at 665,587 to 666,852 _A0563 Rru_A0564: Rru_A0564 - hypothetical protein (NCBI), at 667,041 to 668,165 _A0564 Position (kb) 665 666 667Strain fitness (log2 ratio) -1 0 1at 664.671 kb on + strandat 664.672 kb on - strandat 664.827 kb on + strand, within Rru_A0562at 665.067 kb on + strand, within Rru_A0562at 665.781 kb on + strand, within Rru_A0563at 665.856 kb on + strand, within Rru_A0563at 665.856 kb on + strand, within Rru_A0563at 665.857 kb on - strand, within Rru_A0563at 665.858 kb on + strand, within Rru_A0563at 665.858 kb on + strand, within Rru_A0563at 665.859 kb on - strand, within Rru_A0563at 665.859 kb on - strand, within Rru_A0563at 665.859 kb on - strand, within Rru_A0563at 665.948 kb on + strand, within Rru_A0563at 665.948 kb on + strand, within Rru_A0563at 665.949 kb on - strand, within Rru_A0563at 666.008 kb on + strand, within Rru_A0563at 666.176 kb on + strand, within Rru_A0563at 666.177 kb on - strand, within Rru_A0563at 666.177 kb on - strand, within Rru_A0563at 666.272 kb on + strand, within Rru_A0563at 666.272 kb on + strand, within Rru_A0563at 666.272 kb on + strand, within Rru_A0563at 666.273 kb on - strand, within Rru_A0563at 666.273 kb on - strand, within Rru_A0563at 666.273 kb on - strand, within Rru_A0563at 666.273 kb on - strand, within Rru_A0563at 666.308 kb on - strand, within Rru_A0563at 666.345 kb on + strand, within Rru_A0563at 666.345 kb on + strand, within Rru_A0563at 666.345 kb on + strand, within Rru_A0563at 666.345 kb on + strand, within Rru_A0563at 666.346 kb on - strand, within Rru_A0563at 666.346 kb on - strand, within Rru_A0563at 666.347 kb on + strand, within Rru_A0563at 666.347 kb on + strand, within Rru_A0563at 666.347 kb on + strand, within Rru_A0563at 666.347 kb on + strand, within Rru_A0563at 666.347 kb on + strand, within Rru_A0563at 666.348 kb on - strand, within Rru_A0563at 666.348 kb on - strand, within Rru_A0563at 666.348 kb on - strand, within Rru_A0563at 666.368 kb on + strand, within Rru_A0563at 666.368 kb on + strand, within Rru_A0563at 666.368 kb on + strand, within Rru_A0563at 666.369 kb on - strand, within Rru_A0563at 666.369 kb on - strand, within Rru_A0563at 666.372 kb on + strand, within Rru_A0563at 666.372 kb on + strand, within Rru_A0563at 666.372 kb on + strand, within Rru_A0563at 666.372 kb on + strand, within Rru_A0563at 666.372 kb on + strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.374 kb on + strand, within Rru_A0563at 666.656 kb on + strand, within Rru_A0563at 666.686 kb on + strand, within Rru_A0563at 666.686 kb on + strand, within Rru_A0563at 666.686 kb on + strand, within Rru_A0563at 666.686 kb on + strand, within Rru_A0563at 666.687 kb on - strand, within Rru_A0563at 666.687 kb on - strand, within Rru_A0563at 666.980 kb on + strandat 666.981 kb on - strandat 667.007 kb on - strandat 667.007 kb on - strandat 667.011 kb on + strandat 667.011 kb on + strandat 667.011 kb on + strandat 667.212 kb on + strand, within Rru_A0564at 667.213 kb on - strand, within Rru_A0564at 667.232 kb on + strand, within Rru_A0564at 667.353 kb on - strand, within Rru_A0564at 667.497 kb on + strand, within Rru_A0564at 667.497 kb on + strand, within Rru_A0564at 667.497 kb on + strand, within Rru_A0564at 667.498 kb on - strand, within Rru_A0564at 667.498 kb on - strand, within Rru_A0564at 667.498 kb on - strand, within Rru_A0564at 667.498 kb on - strand, within Rru_A0564at 667.498 kb on - strand, within Rru_A0564

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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664,671 + -0.0
664,672 - -0.2
664,827 + Rru_A0562 0.17 -0.0
665,067 + Rru_A0562 0.43 +0.6
665,781 + Rru_A0563 0.15 -0.0
665,856 + Rru_A0563 0.21 +1.0
665,856 + Rru_A0563 0.21 +0.5
665,857 - Rru_A0563 0.21 +1.0
665,858 + Rru_A0563 0.21 +0.9
665,858 + Rru_A0563 0.21 -0.0
665,859 - Rru_A0563 0.21 +0.4
665,859 - Rru_A0563 0.21 +0.6
665,859 - Rru_A0563 0.21 +0.6
665,948 + Rru_A0563 0.29 +0.5
665,948 + Rru_A0563 0.29 +0.4
665,949 - Rru_A0563 0.29 +1.2
666,008 + Rru_A0563 0.33 -0.6
666,176 + Rru_A0563 0.47 -0.3
666,177 - Rru_A0563 0.47 +0.5
666,177 - Rru_A0563 0.47 +0.4
666,272 + Rru_A0563 0.54 +1.5
666,272 + Rru_A0563 0.54 +1.1
666,272 + Rru_A0563 0.54 -0.0
666,273 - Rru_A0563 0.54 -1.0
666,273 - Rru_A0563 0.54 -0.1
666,273 - Rru_A0563 0.54 -0.0
666,273 - Rru_A0563 0.54 -0.0
666,308 - Rru_A0563 0.57 +0.5
666,345 + Rru_A0563 0.60 -0.0
666,345 + Rru_A0563 0.60 +0.4
666,345 + Rru_A0563 0.60 -0.0
666,345 + Rru_A0563 0.60 +0.8
666,346 - Rru_A0563 0.60 +0.1
666,346 - Rru_A0563 0.60 +0.6
666,347 + Rru_A0563 0.60 -0.0
666,347 + Rru_A0563 0.60 -0.0
666,347 + Rru_A0563 0.60 -0.0
666,347 + Rru_A0563 0.60 +0.4
666,347 + Rru_A0563 0.60 +0.3
666,348 - Rru_A0563 0.60 +0.3
666,348 - Rru_A0563 0.60 +1.0
666,348 - Rru_A0563 0.60 +0.8
666,368 + Rru_A0563 0.62 -0.0
666,368 + Rru_A0563 0.62 -0.0
666,368 + Rru_A0563 0.62 +0.4
666,369 - Rru_A0563 0.62 -0.0
666,369 - Rru_A0563 0.62 -1.0
666,372 + Rru_A0563 0.62 +0.5
666,372 + Rru_A0563 0.62 -0.0
666,372 + Rru_A0563 0.62 -0.0
666,372 + Rru_A0563 0.62 -0.0
666,372 + Rru_A0563 0.62 +0.3
666,373 - Rru_A0563 0.62 -0.0
666,373 - Rru_A0563 0.62 +0.2
666,373 - Rru_A0563 0.62 -0.0
666,373 - Rru_A0563 0.62 -0.1
666,373 - Rru_A0563 0.62 -0.4
666,373 - Rru_A0563 0.62 -0.0
666,373 - Rru_A0563 0.62 -0.2
666,374 + Rru_A0563 0.62 +0.4
666,656 + Rru_A0563 0.84 -0.1
666,686 + Rru_A0563 0.87 -0.1
666,686 + Rru_A0563 0.87 +0.3
666,686 + Rru_A0563 0.87 -0.0
666,686 + Rru_A0563 0.87 +1.1
666,687 - Rru_A0563 0.87 -0.0
666,687 - Rru_A0563 0.87 -0.0
666,980 + +0.2
666,981 - -0.0
667,007 - -0.2
667,007 - -0.0
667,011 + +0.3
667,011 + -0.0
667,011 + -0.0
667,212 + Rru_A0564 0.15 +1.3
667,213 - Rru_A0564 0.15 -0.2
667,232 + Rru_A0564 0.17 +1.0
667,353 - Rru_A0564 0.28 -1.0
667,497 + Rru_A0564 0.41 -0.0
667,497 + Rru_A0564 0.41 -0.0
667,497 + Rru_A0564 0.41 +0.9
667,498 - Rru_A0564 0.41 -0.0
667,498 - Rru_A0564 0.41 -0.0
667,498 - Rru_A0564 0.41 +0.7
667,498 - Rru_A0564 0.41 -0.0
667,498 - Rru_A0564 0.41 +0.4

Or see this region's nucleotide sequence