Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0558 and Rru_A0559 are separated by 84 nucleotides Rru_A0559 and Rru_A0560 are separated by 183 nucleotides
Rru_A0558: Rru_A0558 - Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) (NCBI), at 659,064 to 661,115
_A0558
Rru_A0559: Rru_A0559 - Alpha/beta hydrolase fold (NCBI), at 661,200 to 662,003
_A0559
Rru_A0560: Rru_A0560 - Cytochrome bd ubiquinol oxidase, subunit I (NCBI), at 662,187 to 663,617
_A0560
Position (kb) 661
662
663 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 660.550 kb on + strand, within Rru_A0558 at 660.634 kb on + strand, within Rru_A0558 at 660.680 kb on + strand, within Rru_A0558 at 660.777 kb on - strand, within Rru_A0558 at 660.798 kb on + strand, within Rru_A0558 at 660.832 kb on - strand, within Rru_A0558 at 660.975 kb on - strand at 661.020 kb on + strand at 661.021 kb on - strand at 661.154 kb on + strand at 661.165 kb on + strand at 661.166 kb on - strand at 661.430 kb on + strand, within Rru_A0559 at 661.430 kb on + strand, within Rru_A0559 at 661.430 kb on + strand, within Rru_A0559 at 661.430 kb on + strand, within Rru_A0559 at 661.431 kb on - strand, within Rru_A0559 at 661.431 kb on - strand, within Rru_A0559 at 661.431 kb on - strand, within Rru_A0559 at 661.431 kb on - strand, within Rru_A0559 at 661.431 kb on - strand, within Rru_A0559 at 661.474 kb on + strand, within Rru_A0559 at 661.475 kb on - strand, within Rru_A0559 at 662.058 kb on + strand at 662.058 kb on + strand at 662.059 kb on - strand at 662.150 kb on + strand at 662.150 kb on + strand at 662.151 kb on - strand at 662.151 kb on - strand at 662.154 kb on + strand at 662.154 kb on + strand at 662.155 kb on - strand at 662.155 kb on - strand at 662.293 kb on - strand at 662.352 kb on + strand, within Rru_A0560 at 662.352 kb on + strand, within Rru_A0560 at 662.352 kb on + strand, within Rru_A0560 at 662.353 kb on - strand, within Rru_A0560 at 662.353 kb on - strand, within Rru_A0560 at 662.353 kb on - strand, within Rru_A0560 at 662.353 kb on - strand, within Rru_A0560 at 662.354 kb on + strand, within Rru_A0560 at 662.354 kb on + strand, within Rru_A0560 at 662.354 kb on + strand, within Rru_A0560 at 662.354 kb on + strand, within Rru_A0560 at 662.421 kb on + strand, within Rru_A0560 at 662.421 kb on + strand, within Rru_A0560 at 662.422 kb on - strand, within Rru_A0560 at 662.422 kb on - strand, within Rru_A0560 at 662.422 kb on - strand, within Rru_A0560 at 662.422 kb on - strand, within Rru_A0560 at 662.490 kb on + strand, within Rru_A0560 at 662.490 kb on + strand, within Rru_A0560 at 662.490 kb on + strand, within Rru_A0560 at 662.490 kb on + strand, within Rru_A0560 at 662.491 kb on - strand, within Rru_A0560 at 662.491 kb on - strand, within Rru_A0560 at 662.654 kb on + strand, within Rru_A0560 at 662.654 kb on + strand, within Rru_A0560 at 662.655 kb on - strand, within Rru_A0560 at 662.669 kb on + strand, within Rru_A0560 at 662.750 kb on + strand, within Rru_A0560 at 662.750 kb on + strand, within Rru_A0560 at 662.766 kb on + strand, within Rru_A0560 at 662.767 kb on - strand, within Rru_A0560
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 660,550 + Rru_A0558 0.72 -0.0 660,634 + Rru_A0558 0.77 -0.0 660,680 + Rru_A0558 0.79 -1.0 660,777 - Rru_A0558 0.83 +0.9 660,798 + Rru_A0558 0.85 +1.1 660,832 - Rru_A0558 0.86 +0.7 660,975 - +0.0 661,020 + +1.1 661,021 - -2.0 661,154 + +1.1 661,165 + -1.0 661,166 - +0.3 661,430 + Rru_A0559 0.29 -0.0 661,430 + Rru_A0559 0.29 -0.6 661,430 + Rru_A0559 0.29 -0.0 661,430 + Rru_A0559 0.29 +0.1 661,431 - Rru_A0559 0.29 -1.0 661,431 - Rru_A0559 0.29 +0.6 661,431 - Rru_A0559 0.29 +0.3 661,431 - Rru_A0559 0.29 +0.1 661,431 - Rru_A0559 0.29 -0.0 661,474 + Rru_A0559 0.34 -0.4 661,475 - Rru_A0559 0.34 +0.7 662,058 + -0.0 662,058 + -0.0 662,059 - +0.5 662,150 + -0.0 662,150 + -0.0 662,151 - -0.0 662,151 - +1.0 662,154 + -0.8 662,154 + -0.4 662,155 - -0.0 662,155 - -1.6 662,293 - +0.5 662,352 + Rru_A0560 0.12 -0.0 662,352 + Rru_A0560 0.12 -0.0 662,352 + Rru_A0560 0.12 -0.6 662,353 - Rru_A0560 0.12 +1.4 662,353 - Rru_A0560 0.12 +1.3 662,353 - Rru_A0560 0.12 -0.0 662,353 - Rru_A0560 0.12 -0.0 662,354 + Rru_A0560 0.12 -0.0 662,354 + Rru_A0560 0.12 +1.5 662,354 + Rru_A0560 0.12 -0.0 662,354 + Rru_A0560 0.12 -1.5 662,421 + Rru_A0560 0.16 +0.6 662,421 + Rru_A0560 0.16 -0.0 662,422 - Rru_A0560 0.16 -0.0 662,422 - Rru_A0560 0.16 -0.0 662,422 - Rru_A0560 0.16 +2.9 662,422 - Rru_A0560 0.16 +1.1 662,490 + Rru_A0560 0.21 -0.0 662,490 + Rru_A0560 0.21 -0.0 662,490 + Rru_A0560 0.21 -0.0 662,490 + Rru_A0560 0.21 +1.1 662,491 - Rru_A0560 0.21 -0.0 662,491 - Rru_A0560 0.21 -0.0 662,654 + Rru_A0560 0.33 -0.0 662,654 + Rru_A0560 0.33 -1.0 662,655 - Rru_A0560 0.33 -0.0 662,669 + Rru_A0560 0.34 -0.0 662,750 + Rru_A0560 0.39 -0.0 662,750 + Rru_A0560 0.39 -0.0 662,766 + Rru_A0560 0.40 -0.9 662,767 - Rru_A0560 0.41 -0.0
Or see this region's nucleotide sequence