Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0554 and Rru_A0555 are separated by 14 nucleotides Rru_A0555 and Rru_A0556 are separated by 219 nucleotides Rru_A0556 and Rru_A0557 are separated by 161 nucleotides
Rru_A0554: Rru_A0554 - Rh-like protein/ammonium transporter (NCBI), at 655,212 to 656,531
_A0554
Rru_A0555: Rru_A0555 - Nitrogen regulatory protein P-II (GlnB, GlnK) (NCBI), at 656,546 to 656,884
_A0555
Rru_A0556: Rru_A0556 - Formyltetrahydrofolate deformylase (NCBI), at 657,104 to 657,997
_A0556
Rru_A0557: Rru_A0557 - Methenyltetrahydrofolate cyclohydrolase (NCBI), at 658,159 to 659,049
_A0557
Position (kb) 657
658 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 656.604 kb on + strand, within Rru_A0555 at 656.733 kb on + strand, within Rru_A0555 at 656.734 kb on - strand, within Rru_A0555 at 656.734 kb on - strand, within Rru_A0555 at 656.749 kb on - strand, within Rru_A0555 at 657.229 kb on - strand, within Rru_A0556 at 657.294 kb on + strand, within Rru_A0556 at 657.294 kb on + strand, within Rru_A0556 at 657.294 kb on + strand, within Rru_A0556 at 657.295 kb on - strand, within Rru_A0556 at 657.295 kb on - strand, within Rru_A0556 at 657.346 kb on - strand, within Rru_A0556 at 657.388 kb on + strand, within Rru_A0556 at 657.388 kb on + strand, within Rru_A0556 at 657.444 kb on + strand, within Rru_A0556 at 657.444 kb on + strand, within Rru_A0556 at 657.654 kb on + strand, within Rru_A0556 at 657.654 kb on + strand, within Rru_A0556 at 657.654 kb on + strand, within Rru_A0556 at 657.654 kb on + strand, within Rru_A0556 at 657.655 kb on - strand, within Rru_A0556 at 657.849 kb on + strand, within Rru_A0556 at 657.849 kb on + strand, within Rru_A0556 at 657.849 kb on + strand, within Rru_A0556 at 657.849 kb on + strand, within Rru_A0556 at 657.850 kb on - strand, within Rru_A0556 at 657.850 kb on - strand, within Rru_A0556 at 657.852 kb on + strand, within Rru_A0556 at 657.853 kb on - strand, within Rru_A0556 at 657.853 kb on - strand, within Rru_A0556 at 657.946 kb on + strand at 657.947 kb on - strand at 657.992 kb on + strand at 657.992 kb on + strand at 657.992 kb on + strand at 657.992 kb on + strand at 657.992 kb on + strand at 657.992 kb on + strand at 657.992 kb on + strand at 657.993 kb on - strand at 657.993 kb on - strand at 658.032 kb on + strand at 658.032 kb on + strand at 658.032 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 656,604 + Rru_A0555 0.17 -0.0 656,733 + Rru_A0555 0.55 -0.4 656,734 - Rru_A0555 0.55 +1.2 656,734 - Rru_A0555 0.55 +0.8 656,749 - Rru_A0555 0.60 +1.2 657,229 - Rru_A0556 0.14 -1.2 657,294 + Rru_A0556 0.21 -3.1 657,294 + Rru_A0556 0.21 -1.0 657,294 + Rru_A0556 0.21 -1.6 657,295 - Rru_A0556 0.21 -1.2 657,295 - Rru_A0556 0.21 -1.0 657,346 - Rru_A0556 0.27 -2.5 657,388 + Rru_A0556 0.32 -0.0 657,388 + Rru_A0556 0.32 -0.0 657,444 + Rru_A0556 0.38 -0.0 657,444 + Rru_A0556 0.38 -2.3 657,654 + Rru_A0556 0.62 -0.0 657,654 + Rru_A0556 0.62 -0.0 657,654 + Rru_A0556 0.62 -3.3 657,654 + Rru_A0556 0.62 -2.0 657,655 - Rru_A0556 0.62 -0.0 657,849 + Rru_A0556 0.83 -0.0 657,849 + Rru_A0556 0.83 -1.6 657,849 + Rru_A0556 0.83 -1.9 657,849 + Rru_A0556 0.83 -1.4 657,850 - Rru_A0556 0.83 -0.0 657,850 - Rru_A0556 0.83 -4.3 657,852 + Rru_A0556 0.84 -1.6 657,853 - Rru_A0556 0.84 -1.1 657,853 - Rru_A0556 0.84 -0.0 657,946 + -0.0 657,947 - -0.0 657,992 + -0.0 657,992 + -1.0 657,992 + -0.0 657,992 + -1.0 657,992 + -0.0 657,992 + -0.0 657,992 + -1.7 657,993 - +0.2 657,993 - -0.3 658,032 + -1.5 658,032 + -0.0 658,032 + -0.6
Or see this region's nucleotide sequence