Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0547

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0546 and Rru_A0547 are separated by 195 nucleotidesRru_A0547 and Rru_A0548 are separated by 28 nucleotides Rru_A0546: Rru_A0546 - hypothetical protein (NCBI), at 643,105 to 645,090 _A0546 Rru_A0547: Rru_A0547 - Flagellar hook capping protein (NCBI), at 645,286 to 646,023 _A0547 Rru_A0548: Rru_A0548 - Flagellar hook-length control protein (NCBI), at 646,052 to 647,875 _A0548 Position (kb) 645 646 647Strain fitness (log2 ratio) -2 -1 0 1 2at 644.309 kb on + strand, within Rru_A0546at 644.309 kb on + strand, within Rru_A0546at 644.310 kb on - strand, within Rru_A0546at 644.310 kb on - strand, within Rru_A0546at 644.334 kb on + strand, within Rru_A0546at 644.334 kb on + strand, within Rru_A0546at 644.408 kb on + strand, within Rru_A0546at 644.408 kb on + strand, within Rru_A0546at 644.409 kb on - strand, within Rru_A0546at 644.409 kb on - strand, within Rru_A0546at 644.409 kb on - strand, within Rru_A0546at 644.418 kb on + strand, within Rru_A0546at 644.419 kb on - strand, within Rru_A0546at 644.475 kb on + strand, within Rru_A0546at 644.475 kb on + strand, within Rru_A0546at 644.475 kb on + strand, within Rru_A0546at 644.565 kb on + strand, within Rru_A0546at 644.565 kb on + strand, within Rru_A0546at 644.565 kb on + strand, within Rru_A0546at 644.566 kb on - strand, within Rru_A0546at 644.566 kb on - strand, within Rru_A0546at 644.597 kb on + strand, within Rru_A0546at 644.597 kb on + strand, within Rru_A0546at 644.597 kb on + strand, within Rru_A0546at 644.597 kb on + strand, within Rru_A0546at 644.598 kb on - strand, within Rru_A0546at 644.598 kb on - strand, within Rru_A0546at 644.598 kb on - strand, within Rru_A0546at 644.598 kb on - strand, within Rru_A0546at 644.600 kb on + strand, within Rru_A0546at 644.600 kb on + strand, within Rru_A0546at 644.600 kb on + strand, within Rru_A0546at 644.601 kb on - strand, within Rru_A0546at 644.601 kb on - strand, within Rru_A0546at 644.601 kb on - strand, within Rru_A0546at 644.634 kb on + strand, within Rru_A0546at 644.635 kb on - strand, within Rru_A0546at 644.636 kb on + strand, within Rru_A0546at 644.636 kb on + strand, within Rru_A0546at 644.637 kb on - strand, within Rru_A0546at 644.711 kb on + strand, within Rru_A0546at 644.711 kb on + strand, within Rru_A0546at 644.711 kb on + strand, within Rru_A0546at 644.711 kb on + strand, within Rru_A0546at 644.711 kb on + strand, within Rru_A0546at 644.711 kb on + strand, within Rru_A0546at 644.711 kb on + strand, within Rru_A0546at 644.711 kb on + strand, within Rru_A0546at 644.711 kb on + strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.714 kb on + strand, within Rru_A0546at 644.715 kb on - strand, within Rru_A0546at 644.735 kb on + strand, within Rru_A0546at 644.736 kb on - strand, within Rru_A0546at 644.774 kb on + strand, within Rru_A0546at 644.774 kb on + strand, within Rru_A0546at 644.775 kb on - strand, within Rru_A0546at 644.775 kb on - strand, within Rru_A0546at 644.924 kb on + strandat 644.924 kb on + strandat 644.925 kb on - strandat 644.985 kb on - strandat 644.994 kb on + strandat 645.080 kb on + strandat 645.080 kb on + strandat 645.081 kb on - strandat 645.081 kb on - strandat 645.156 kb on + strandat 645.217 kb on - strandat 645.267 kb on - strandat 645.354 kb on + strandat 645.355 kb on - strandat 645.514 kb on - strand, within Rru_A0547at 645.518 kb on + strand, within Rru_A0547at 645.518 kb on + strand, within Rru_A0547at 645.518 kb on + strand, within Rru_A0547at 645.518 kb on + strand, within Rru_A0547at 645.519 kb on - strand, within Rru_A0547at 645.519 kb on - strand, within Rru_A0547at 645.546 kb on - strand, within Rru_A0547at 645.674 kb on + strand, within Rru_A0547at 645.674 kb on + strand, within Rru_A0547at 645.674 kb on + strand, within Rru_A0547at 645.674 kb on + strand, within Rru_A0547at 645.674 kb on + strand, within Rru_A0547at 645.674 kb on + strand, within Rru_A0547at 645.675 kb on - strand, within Rru_A0547at 645.675 kb on - strand, within Rru_A0547at 645.675 kb on - strand, within Rru_A0547at 645.731 kb on + strand, within Rru_A0547at 645.731 kb on + strand, within Rru_A0547at 645.731 kb on + strand, within Rru_A0547at 645.732 kb on - strand, within Rru_A0547at 645.732 kb on - strand, within Rru_A0547at 645.732 kb on - strand, within Rru_A0547at 645.732 kb on - strand, within Rru_A0547at 645.732 kb on - strand, within Rru_A0547at 645.732 kb on - strand, within Rru_A0547at 645.856 kb on - strand, within Rru_A0547at 645.856 kb on - strand, within Rru_A0547at 645.933 kb on + strand, within Rru_A0547at 645.934 kb on - strand, within Rru_A0547at 646.012 kb on + strandat 646.013 kb on - strandat 646.013 kb on - strandat 646.918 kb on + strand, within Rru_A0548at 646.918 kb on + strand, within Rru_A0548at 646.919 kb on - strand, within Rru_A0548at 646.919 kb on - strand, within Rru_A0548at 646.919 kb on - strand, within Rru_A0548at 646.921 kb on + strand, within Rru_A0548at 646.922 kb on - strand, within Rru_A0548at 646.922 kb on - strand, within Rru_A0548at 646.922 kb on - strand, within Rru_A0548at 646.922 kb on - strand, within Rru_A0548

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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644,309 + Rru_A0546 0.61 -0.3
644,309 + Rru_A0546 0.61 -0.0
644,310 - Rru_A0546 0.61 +0.4
644,310 - Rru_A0546 0.61 -0.0
644,334 + Rru_A0546 0.62 +0.4
644,334 + Rru_A0546 0.62 -0.0
644,408 + Rru_A0546 0.66 -0.1
644,408 + Rru_A0546 0.66 -0.3
644,409 - Rru_A0546 0.66 +0.3
644,409 - Rru_A0546 0.66 -0.0
644,409 - Rru_A0546 0.66 -1.0
644,418 + Rru_A0546 0.66 +1.0
644,419 - Rru_A0546 0.66 -1.0
644,475 + Rru_A0546 0.69 +1.2
644,475 + Rru_A0546 0.69 +0.1
644,475 + Rru_A0546 0.69 -0.0
644,565 + Rru_A0546 0.74 +0.4
644,565 + Rru_A0546 0.74 -0.0
644,565 + Rru_A0546 0.74 -0.0
644,566 - Rru_A0546 0.74 +0.1
644,566 - Rru_A0546 0.74 +0.2
644,597 + Rru_A0546 0.75 -0.0
644,597 + Rru_A0546 0.75 +1.0
644,597 + Rru_A0546 0.75 -1.0
644,597 + Rru_A0546 0.75 -0.0
644,598 - Rru_A0546 0.75 -0.1
644,598 - Rru_A0546 0.75 +0.2
644,598 - Rru_A0546 0.75 -0.0
644,598 - Rru_A0546 0.75 +0.3
644,600 + Rru_A0546 0.75 -0.4
644,600 + Rru_A0546 0.75 +0.3
644,600 + Rru_A0546 0.75 +0.2
644,601 - Rru_A0546 0.75 +0.4
644,601 - Rru_A0546 0.75 -0.0
644,601 - Rru_A0546 0.75 -0.0
644,634 + Rru_A0546 0.77 +0.9
644,635 - Rru_A0546 0.77 -0.0
644,636 + Rru_A0546 0.77 +0.6
644,636 + Rru_A0546 0.77 +0.6
644,637 - Rru_A0546 0.77 -0.0
644,711 + Rru_A0546 0.81 -0.0
644,711 + Rru_A0546 0.81 +0.5
644,711 + Rru_A0546 0.81 -0.0
644,711 + Rru_A0546 0.81 -0.0
644,711 + Rru_A0546 0.81 -1.0
644,711 + Rru_A0546 0.81 +0.1
644,711 + Rru_A0546 0.81 -1.0
644,711 + Rru_A0546 0.81 -0.0
644,711 + Rru_A0546 0.81 -0.0
644,712 - Rru_A0546 0.81 -0.4
644,712 - Rru_A0546 0.81 -0.6
644,712 - Rru_A0546 0.81 +0.2
644,712 - Rru_A0546 0.81 -0.4
644,712 - Rru_A0546 0.81 +0.5
644,712 - Rru_A0546 0.81 -1.3
644,712 - Rru_A0546 0.81 +0.7
644,712 - Rru_A0546 0.81 -0.0
644,712 - Rru_A0546 0.81 +0.2
644,712 - Rru_A0546 0.81 -0.0
644,712 - Rru_A0546 0.81 -0.0
644,712 - Rru_A0546 0.81 -0.0
644,714 + Rru_A0546 0.81 +0.8
644,715 - Rru_A0546 0.81 -0.6
644,735 + Rru_A0546 0.82 -0.7
644,736 - Rru_A0546 0.82 -0.2
644,774 + Rru_A0546 0.84 -0.0
644,774 + Rru_A0546 0.84 +0.6
644,775 - Rru_A0546 0.84 -0.0
644,775 - Rru_A0546 0.84 -0.0
644,924 + -0.0
644,924 + -0.0
644,925 - -0.2
644,985 - +0.9
644,994 + -0.0
645,080 + -0.0
645,080 + -0.0
645,081 - -1.0
645,081 - +0.3
645,156 + -1.0
645,217 - +0.4
645,267 - +0.1
645,354 + +0.3
645,355 - +0.6
645,514 - Rru_A0547 0.31 +0.6
645,518 + Rru_A0547 0.31 +0.4
645,518 + Rru_A0547 0.31 +0.9
645,518 + Rru_A0547 0.31 -0.0
645,518 + Rru_A0547 0.31 -0.0
645,519 - Rru_A0547 0.32 -0.0
645,519 - Rru_A0547 0.32 -0.3
645,546 - Rru_A0547 0.35 +1.0
645,674 + Rru_A0547 0.53 -0.0
645,674 + Rru_A0547 0.53 -0.0
645,674 + Rru_A0547 0.53 +0.4
645,674 + Rru_A0547 0.53 -0.0
645,674 + Rru_A0547 0.53 +0.5
645,674 + Rru_A0547 0.53 +0.2
645,675 - Rru_A0547 0.53 +0.9
645,675 - Rru_A0547 0.53 -0.0
645,675 - Rru_A0547 0.53 -0.0
645,731 + Rru_A0547 0.60 -1.6
645,731 + Rru_A0547 0.60 +0.6
645,731 + Rru_A0547 0.60 +1.2
645,732 - Rru_A0547 0.60 -0.0
645,732 - Rru_A0547 0.60 -2.0
645,732 - Rru_A0547 0.60 -0.0
645,732 - Rru_A0547 0.60 -0.0
645,732 - Rru_A0547 0.60 +0.7
645,732 - Rru_A0547 0.60 -0.0
645,856 - Rru_A0547 0.77 -0.0
645,856 - Rru_A0547 0.77 -0.0
645,933 + Rru_A0547 0.88 +1.8
645,934 - Rru_A0547 0.88 +0.4
646,012 + -0.0
646,013 - -0.0
646,013 - +0.6
646,918 + Rru_A0548 0.47 -0.0
646,918 + Rru_A0548 0.47 -0.0
646,919 - Rru_A0548 0.48 -0.0
646,919 - Rru_A0548 0.48 -0.0
646,919 - Rru_A0548 0.48 +1.0
646,921 + Rru_A0548 0.48 -0.0
646,922 - Rru_A0548 0.48 -1.0
646,922 - Rru_A0548 0.48 -0.0
646,922 - Rru_A0548 0.48 -0.0
646,922 - Rru_A0548 0.48 +0.5

Or see this region's nucleotide sequence