Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0540 and Rru_A0541 are separated by 49 nucleotides Rru_A0541 and Rru_A0542 are separated by 209 nucleotides Rru_A0542 and Rru_A0543 are separated by 12 nucleotides
Rru_A0540: Rru_A0540 - Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI), at 636,257 to 637,594
_A0540
Rru_A0541: Rru_A0541 - MotA/TolQ/ExbB proton channel (NCBI), at 637,644 to 638,462
_A0541
Rru_A0542: Rru_A0542 - Surface presentation of antigens (SPOA) protein (NCBI), at 638,672 to 639,019
_A0542
Rru_A0543: Rru_A0543 - hypothetical protein (NCBI), at 639,032 to 639,766
_A0543
Position (kb) 637
638
639 Strain fitness (log2 ratio) -1
0
1 at 636.805 kb on + strand, within Rru_A0540 at 637.228 kb on + strand, within Rru_A0540 at 637.228 kb on + strand, within Rru_A0540 at 637.229 kb on - strand, within Rru_A0540 at 637.229 kb on - strand, within Rru_A0540 at 637.230 kb on + strand, within Rru_A0540 at 637.230 kb on + strand, within Rru_A0540 at 637.231 kb on - strand, within Rru_A0540 at 637.308 kb on + strand, within Rru_A0540 at 637.308 kb on + strand, within Rru_A0540 at 637.308 kb on + strand, within Rru_A0540 at 637.308 kb on + strand, within Rru_A0540 at 637.308 kb on + strand, within Rru_A0540 at 637.309 kb on - strand, within Rru_A0540 at 637.309 kb on - strand, within Rru_A0540 at 637.309 kb on - strand, within Rru_A0540 at 637.652 kb on - strand at 637.652 kb on - strand at 637.655 kb on - strand at 637.655 kb on - strand at 637.655 kb on - strand at 637.655 kb on - strand at 637.750 kb on + strand, within Rru_A0541 at 637.751 kb on - strand, within Rru_A0541 at 637.751 kb on - strand, within Rru_A0541 at 637.751 kb on - strand, within Rru_A0541 at 637.840 kb on + strand, within Rru_A0541 at 637.840 kb on + strand, within Rru_A0541 at 637.840 kb on + strand, within Rru_A0541 at 637.840 kb on + strand, within Rru_A0541 at 637.840 kb on + strand, within Rru_A0541 at 637.841 kb on - strand, within Rru_A0541 at 637.841 kb on - strand, within Rru_A0541 at 637.841 kb on - strand, within Rru_A0541 at 637.841 kb on - strand, within Rru_A0541 at 638.019 kb on - strand, within Rru_A0541 at 638.612 kb on + strand at 638.769 kb on + strand, within Rru_A0542 at 638.770 kb on - strand, within Rru_A0542 at 638.852 kb on - strand, within Rru_A0542 at 638.852 kb on - strand, within Rru_A0542 at 638.895 kb on + strand, within Rru_A0542 at 638.896 kb on - strand, within Rru_A0542 at 639.033 kb on + strand at 639.034 kb on - strand at 639.243 kb on + strand, within Rru_A0543 at 639.287 kb on - strand, within Rru_A0543 at 639.454 kb on + strand, within Rru_A0543
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 636,805 + Rru_A0540 0.41 +0.5 637,228 + Rru_A0540 0.73 +0.0 637,228 + Rru_A0540 0.73 +0.0 637,229 - Rru_A0540 0.73 -1.1 637,229 - Rru_A0540 0.73 +0.2 637,230 + Rru_A0540 0.73 +0.0 637,230 + Rru_A0540 0.73 +0.0 637,231 - Rru_A0540 0.73 +0.0 637,308 + Rru_A0540 0.79 +0.1 637,308 + Rru_A0540 0.79 +0.5 637,308 + Rru_A0540 0.79 +0.0 637,308 + Rru_A0540 0.79 +1.5 637,308 + Rru_A0540 0.79 +0.0 637,309 - Rru_A0540 0.79 +0.0 637,309 - Rru_A0540 0.79 +0.6 637,309 - Rru_A0540 0.79 +0.8 637,652 - -0.2 637,652 - +0.0 637,655 - +0.0 637,655 - -1.2 637,655 - +0.5 637,655 - +0.0 637,750 + Rru_A0541 0.13 +0.5 637,751 - Rru_A0541 0.13 +1.4 637,751 - Rru_A0541 0.13 +0.3 637,751 - Rru_A0541 0.13 +0.0 637,840 + Rru_A0541 0.24 +0.7 637,840 + Rru_A0541 0.24 +1.0 637,840 + Rru_A0541 0.24 +1.0 637,840 + Rru_A0541 0.24 +1.4 637,840 + Rru_A0541 0.24 +0.0 637,841 - Rru_A0541 0.24 +0.5 637,841 - Rru_A0541 0.24 +0.0 637,841 - Rru_A0541 0.24 +0.3 637,841 - Rru_A0541 0.24 +1.0 638,019 - Rru_A0541 0.46 +0.0 638,612 + +1.1 638,769 + Rru_A0542 0.28 +0.1 638,770 - Rru_A0542 0.28 -0.1 638,852 - Rru_A0542 0.52 +0.1 638,852 - Rru_A0542 0.52 -0.0 638,895 + Rru_A0542 0.64 +0.6 638,896 - Rru_A0542 0.64 -0.4 639,033 + -0.0 639,034 - -1.0 639,243 + Rru_A0543 0.29 +1.1 639,287 - Rru_A0543 0.35 +0.9 639,454 + Rru_A0543 0.57 -0.0
Or see this region's nucleotide sequence