Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0537 and Rru_A0538 are separated by 4 nucleotides Rru_A0538 and Rru_A0539 are separated by 156 nucleotides Rru_A0539 and Rru_A0540 are separated by 25 nucleotides
Rru_A0537: Rru_A0537 - Protein of unknown function DUF955 (NCBI), at 632,163 to 633,422
_A0537
Rru_A0538: Rru_A0538 - hypothetical protein (NCBI), at 633,427 to 633,912
_A0538
Rru_A0539: Rru_A0539 - Flagellar biosynthesis protein FlhA (NCBI), at 634,069 to 636,231
_A0539
Rru_A0540: Rru_A0540 - Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI), at 636,257 to 637,594
_A0540
Position (kb) 634
635
636
637 Strain fitness (log2 ratio) -2
-1
0
1 at 633.111 kb on - strand, within Rru_A0537 at 633.235 kb on - strand, within Rru_A0537 at 633.475 kb on + strand at 633.476 kb on - strand, within Rru_A0538 at 633.688 kb on + strand, within Rru_A0538 at 633.689 kb on - strand, within Rru_A0538 at 633.708 kb on + strand, within Rru_A0538 at 633.709 kb on - strand, within Rru_A0538 at 633.865 kb on - strand at 633.968 kb on + strand at 633.969 kb on - strand at 634.013 kb on - strand at 634.169 kb on + strand at 634.169 kb on + strand at 634.170 kb on - strand at 634.656 kb on + strand, within Rru_A0539 at 634.656 kb on + strand, within Rru_A0539 at 634.656 kb on + strand, within Rru_A0539 at 634.656 kb on + strand, within Rru_A0539 at 634.657 kb on - strand, within Rru_A0539 at 634.680 kb on + strand, within Rru_A0539 at 634.681 kb on - strand, within Rru_A0539 at 634.716 kb on + strand, within Rru_A0539 at 634.717 kb on - strand, within Rru_A0539 at 634.719 kb on - strand, within Rru_A0539 at 634.892 kb on + strand, within Rru_A0539 at 634.892 kb on + strand, within Rru_A0539 at 634.893 kb on - strand, within Rru_A0539 at 634.893 kb on - strand, within Rru_A0539 at 634.893 kb on - strand, within Rru_A0539 at 634.893 kb on - strand, within Rru_A0539 at 634.901 kb on + strand, within Rru_A0539 at 634.901 kb on + strand, within Rru_A0539 at 634.901 kb on + strand, within Rru_A0539 at 634.905 kb on + strand, within Rru_A0539 at 634.905 kb on + strand, within Rru_A0539 at 634.905 kb on + strand, within Rru_A0539 at 634.906 kb on - strand, within Rru_A0539 at 634.906 kb on - strand, within Rru_A0539 at 634.906 kb on - strand, within Rru_A0539 at 635.049 kb on - strand, within Rru_A0539 at 635.049 kb on - strand, within Rru_A0539 at 635.181 kb on + strand, within Rru_A0539 at 635.438 kb on + strand, within Rru_A0539 at 635.438 kb on + strand, within Rru_A0539 at 635.438 kb on + strand, within Rru_A0539 at 635.439 kb on - strand, within Rru_A0539 at 635.439 kb on - strand, within Rru_A0539 at 635.439 kb on - strand, within Rru_A0539 at 635.439 kb on - strand, within Rru_A0539 at 635.439 kb on - strand, within Rru_A0539 at 636.238 kb on - strand at 636.315 kb on + strand at 636.316 kb on - strand at 636.530 kb on - strand, within Rru_A0540 at 636.805 kb on + strand, within Rru_A0540 at 637.228 kb on + strand, within Rru_A0540 at 637.228 kb on + strand, within Rru_A0540 at 637.229 kb on - strand, within Rru_A0540 at 637.229 kb on - strand, within Rru_A0540 at 637.230 kb on + strand, within Rru_A0540 at 637.230 kb on + strand, within Rru_A0540 at 637.231 kb on - strand, within Rru_A0540
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 633,111 - Rru_A0537 0.75 +0.0 633,235 - Rru_A0537 0.85 +0.3 633,475 + +0.0 633,476 - Rru_A0538 0.10 +0.0 633,688 + Rru_A0538 0.54 +1.2 633,689 - Rru_A0538 0.54 +0.6 633,708 + Rru_A0538 0.58 +1.1 633,709 - Rru_A0538 0.58 +0.6 633,865 - +0.8 633,968 + +1.1 633,969 - -0.4 634,013 - +1.4 634,169 + +0.1 634,169 + +0.9 634,170 - +1.0 634,656 + Rru_A0539 0.27 +0.8 634,656 + Rru_A0539 0.27 +0.0 634,656 + Rru_A0539 0.27 +0.0 634,656 + Rru_A0539 0.27 +0.8 634,657 - Rru_A0539 0.27 +0.7 634,680 + Rru_A0539 0.28 +0.8 634,681 - Rru_A0539 0.28 +0.6 634,716 + Rru_A0539 0.30 +0.0 634,717 - Rru_A0539 0.30 +0.6 634,719 - Rru_A0539 0.30 -0.0 634,892 + Rru_A0539 0.38 +0.9 634,892 + Rru_A0539 0.38 +0.6 634,893 - Rru_A0539 0.38 +0.3 634,893 - Rru_A0539 0.38 +1.0 634,893 - Rru_A0539 0.38 +0.6 634,893 - Rru_A0539 0.38 +0.0 634,901 + Rru_A0539 0.38 +0.8 634,901 + Rru_A0539 0.38 +0.6 634,901 + Rru_A0539 0.38 +0.0 634,905 + Rru_A0539 0.39 +1.3 634,905 + Rru_A0539 0.39 +0.0 634,905 + Rru_A0539 0.39 +0.0 634,906 - Rru_A0539 0.39 +0.0 634,906 - Rru_A0539 0.39 +1.4 634,906 - Rru_A0539 0.39 +0.0 635,049 - Rru_A0539 0.45 +0.0 635,049 - Rru_A0539 0.45 +0.0 635,181 + Rru_A0539 0.51 +0.0 635,438 + Rru_A0539 0.63 +0.6 635,438 + Rru_A0539 0.63 +0.6 635,438 + Rru_A0539 0.63 +0.0 635,439 - Rru_A0539 0.63 -0.2 635,439 - Rru_A0539 0.63 +0.0 635,439 - Rru_A0539 0.63 +0.5 635,439 - Rru_A0539 0.63 +0.4 635,439 - Rru_A0539 0.63 +1.0 636,238 - -1.0 636,315 + +0.0 636,316 - -2.6 636,530 - Rru_A0540 0.20 -0.4 636,805 + Rru_A0540 0.41 +0.5 637,228 + Rru_A0540 0.73 +0.0 637,228 + Rru_A0540 0.73 +0.0 637,229 - Rru_A0540 0.73 -1.1 637,229 - Rru_A0540 0.73 +0.2 637,230 + Rru_A0540 0.73 +0.0 637,230 + Rru_A0540 0.73 +0.0 637,231 - Rru_A0540 0.73 +0.0
Or see this region's nucleotide sequence