Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0522

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0521 and Rru_A0522 are separated by 179 nucleotidesRru_A0522 and Rru_A0523 are separated by 31 nucleotides Rru_A0521: Rru_A0521 - CheA Signal Transduction Histidine Kinases (STHK) (NCBI), at 614,264 to 617,092 _A0521 Rru_A0522: Rru_A0522 - Response regulator receiver domain protein (CheY) (NCBI), at 617,272 to 617,643 _A0522 Rru_A0523: Rru_A0523 - Two component CheB methylesterase (NCBI), at 617,675 to 618,838 _A0523 Position (kb) 617 618Strain fitness (log2 ratio) -2 -1 0 1at 616.525 kb on + strand, within Rru_A0521at 616.526 kb on - strand, within Rru_A0521at 616.628 kb on + strand, within Rru_A0521at 616.631 kb on + strand, within Rru_A0521at 616.631 kb on + strand, within Rru_A0521at 616.631 kb on + strand, within Rru_A0521at 616.631 kb on + strand, within Rru_A0521at 616.631 kb on + strand, within Rru_A0521at 616.631 kb on + strand, within Rru_A0521at 616.632 kb on - strand, within Rru_A0521at 616.632 kb on - strand, within Rru_A0521at 616.632 kb on - strand, within Rru_A0521at 616.632 kb on - strand, within Rru_A0521at 616.632 kb on - strand, within Rru_A0521at 617.003 kb on + strandat 617.003 kb on + strandat 617.003 kb on + strandat 617.003 kb on + strandat 617.003 kb on + strandat 617.003 kb on + strandat 617.003 kb on + strandat 617.003 kb on + strandat 617.004 kb on - strandat 617.004 kb on - strandat 617.004 kb on - strandat 617.004 kb on - strandat 617.004 kb on - strandat 617.004 kb on - strandat 617.210 kb on + strandat 617.210 kb on + strandat 617.211 kb on - strandat 617.267 kb on + strandat 617.267 kb on + strandat 617.268 kb on - strandat 617.268 kb on - strandat 617.434 kb on - strand, within Rru_A0522at 617.434 kb on - strand, within Rru_A0522at 617.529 kb on + strand, within Rru_A0522at 617.573 kb on - strand, within Rru_A0522at 617.573 kb on - strand, within Rru_A0522at 617.574 kb on + strand, within Rru_A0522at 617.574 kb on + strand, within Rru_A0522at 617.575 kb on - strand, within Rru_A0522at 617.575 kb on - strand, within Rru_A0522at 617.577 kb on + strand, within Rru_A0522at 617.577 kb on + strand, within Rru_A0522at 617.577 kb on + strand, within Rru_A0522at 617.578 kb on - strand, within Rru_A0522at 617.707 kb on + strandat 617.707 kb on + strandat 617.925 kb on + strand, within Rru_A0523at 617.925 kb on + strand, within Rru_A0523at 617.926 kb on - strand, within Rru_A0523at 617.926 kb on - strand, within Rru_A0523at 617.926 kb on - strand, within Rru_A0523at 618.373 kb on + strand, within Rru_A0523at 618.373 kb on + strand, within Rru_A0523at 618.373 kb on + strand, within Rru_A0523at 618.373 kb on + strand, within Rru_A0523at 618.374 kb on - strand, within Rru_A0523at 618.374 kb on - strand, within Rru_A0523at 618.374 kb on - strand, within Rru_A0523at 618.409 kb on + strand, within Rru_A0523at 618.410 kb on - strand, within Rru_A0523at 618.410 kb on - strand, within Rru_A0523at 618.475 kb on + strand, within Rru_A0523at 618.476 kb on - strand, within Rru_A0523at 618.476 kb on - strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.479 kb on + strand, within Rru_A0523at 618.480 kb on - strand, within Rru_A0523at 618.480 kb on - strand, within Rru_A0523at 618.480 kb on - strand, within Rru_A0523at 618.480 kb on - strand, within Rru_A0523at 618.480 kb on - strand, within Rru_A0523at 618.480 kb on - strand, within Rru_A0523at 618.498 kb on - strand, within Rru_A0523at 618.498 kb on - strand, within Rru_A0523at 618.614 kb on + strand, within Rru_A0523at 618.614 kb on + strand, within Rru_A0523

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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616,525 + Rru_A0521 0.80 +0.3
616,526 - Rru_A0521 0.80 -1.2
616,628 + Rru_A0521 0.84 +0.6
616,631 + Rru_A0521 0.84 +0.1
616,631 + Rru_A0521 0.84 -1.0
616,631 + Rru_A0521 0.84 -0.3
616,631 + Rru_A0521 0.84 +0.0
616,631 + Rru_A0521 0.84 +0.1
616,631 + Rru_A0521 0.84 +0.8
616,632 - Rru_A0521 0.84 -1.6
616,632 - Rru_A0521 0.84 +0.0
616,632 - Rru_A0521 0.84 +0.0
616,632 - Rru_A0521 0.84 +0.0
616,632 - Rru_A0521 0.84 -1.8
617,003 + +0.0
617,003 + +0.0
617,003 + -1.6
617,003 + +0.0
617,003 + +0.0
617,003 + +1.3
617,003 + +0.0
617,003 + +0.0
617,004 - +0.0
617,004 - +0.0
617,004 - -0.4
617,004 - +0.0
617,004 - +0.0
617,004 - -0.4
617,210 + +0.6
617,210 + +0.0
617,211 - +0.3
617,267 + +0.0
617,267 + +0.3
617,268 - -1.0
617,268 - +0.0
617,434 - Rru_A0522 0.44 -2.3
617,434 - Rru_A0522 0.44 -1.0
617,529 + Rru_A0522 0.69 +0.0
617,573 - Rru_A0522 0.81 +0.7
617,573 - Rru_A0522 0.81 +0.0
617,574 + Rru_A0522 0.81 -0.1
617,574 + Rru_A0522 0.81 +0.0
617,575 - Rru_A0522 0.81 +0.0
617,575 - Rru_A0522 0.81 +0.0
617,577 + Rru_A0522 0.82 +1.2
617,577 + Rru_A0522 0.82 -0.1
617,577 + Rru_A0522 0.82 +0.0
617,578 - Rru_A0522 0.82 +0.0
617,707 + +0.7
617,707 + +0.0
617,925 + Rru_A0523 0.21 +0.0
617,925 + Rru_A0523 0.21 +0.0
617,926 - Rru_A0523 0.22 +0.1
617,926 - Rru_A0523 0.22 +0.0
617,926 - Rru_A0523 0.22 +0.0
618,373 + Rru_A0523 0.60 +0.1
618,373 + Rru_A0523 0.60 +0.2
618,373 + Rru_A0523 0.60 -0.0
618,373 + Rru_A0523 0.60 +0.4
618,374 - Rru_A0523 0.60 +0.0
618,374 - Rru_A0523 0.60 -1.6
618,374 - Rru_A0523 0.60 +0.6
618,409 + Rru_A0523 0.63 +0.6
618,410 - Rru_A0523 0.63 +0.0
618,410 - Rru_A0523 0.63 +0.6
618,475 + Rru_A0523 0.69 +0.0
618,476 - Rru_A0523 0.69 +0.0
618,476 - Rru_A0523 0.69 +0.0
618,479 + Rru_A0523 0.69 -1.6
618,479 + Rru_A0523 0.69 +0.0
618,479 + Rru_A0523 0.69 -0.0
618,479 + Rru_A0523 0.69 +0.0
618,479 + Rru_A0523 0.69 -0.2
618,479 + Rru_A0523 0.69 +0.0
618,479 + Rru_A0523 0.69 +0.3
618,480 - Rru_A0523 0.69 +0.0
618,480 - Rru_A0523 0.69 +0.3
618,480 - Rru_A0523 0.69 -1.0
618,480 - Rru_A0523 0.69 +0.6
618,480 - Rru_A0523 0.69 +0.5
618,480 - Rru_A0523 0.69 +0.3
618,498 - Rru_A0523 0.71 +0.2
618,498 - Rru_A0523 0.71 -0.1
618,614 + Rru_A0523 0.81 +0.1
618,614 + Rru_A0523 0.81 +0.0

Or see this region's nucleotide sequence