Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0512 and Rru_A0513 are separated by 145 nucleotides Rru_A0513 and Rru_A0514 are separated by 239 nucleotides Rru_A0514 and Rru_A0515 are separated by 78 nucleotides
Rru_A0512: Rru_A0512 - hypothetical protein (NCBI), at 606,570 to 607,532
_A0512
Rru_A0513: Rru_A0513 - Protein of unknown function DUF952 (NCBI), at 607,678 to 608,043
_A0513
Rru_A0514: Rru_A0514 - Dihydroorotate dehydrogenase 2 (NCBI), at 608,283 to 609,386
_A0514
Rru_A0515: Rru_A0515 - HAD-superfamily subfamily IIA hydrolase (NCBI), at 609,465 to 610,352
_A0515
Position (kb) 608
609
610 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 607.293 kb on + strand, within Rru_A0512 at 607.316 kb on - strand, within Rru_A0512 at 607.406 kb on + strand, within Rru_A0512 at 607.406 kb on + strand, within Rru_A0512 at 607.495 kb on - strand at 607.509 kb on - strand at 607.509 kb on - strand at 607.509 kb on - strand at 607.556 kb on + strand at 607.556 kb on + strand at 607.556 kb on + strand at 607.557 kb on - strand at 607.561 kb on + strand at 607.561 kb on + strand at 607.561 kb on + strand at 607.562 kb on - strand at 607.583 kb on + strand at 607.666 kb on + strand at 607.667 kb on - strand at 607.667 kb on - strand at 607.667 kb on - strand at 607.667 kb on - strand at 607.667 kb on - strand at 607.667 kb on - strand at 607.696 kb on + strand at 607.697 kb on - strand at 607.942 kb on + strand, within Rru_A0513 at 607.942 kb on + strand, within Rru_A0513 at 607.942 kb on + strand, within Rru_A0513 at 607.942 kb on + strand, within Rru_A0513 at 607.943 kb on - strand, within Rru_A0513 at 607.943 kb on - strand, within Rru_A0513 at 607.943 kb on - strand, within Rru_A0513 at 607.943 kb on - strand, within Rru_A0513 at 608.041 kb on + strand at 608.094 kb on + strand at 608.095 kb on - strand at 608.095 kb on - strand at 608.105 kb on + strand at 608.105 kb on + strand at 608.105 kb on + strand at 608.106 kb on - strand at 608.106 kb on - strand at 608.106 kb on - strand at 608.168 kb on - strand at 608.213 kb on + strand at 608.295 kb on + strand at 608.736 kb on + strand, within Rru_A0514 at 608.775 kb on + strand, within Rru_A0514 at 608.775 kb on + strand, within Rru_A0514 at 608.946 kb on - strand, within Rru_A0514 at 608.946 kb on - strand, within Rru_A0514 at 608.946 kb on - strand, within Rru_A0514 at 609.005 kb on + strand, within Rru_A0514 at 609.005 kb on + strand, within Rru_A0514 at 609.006 kb on - strand, within Rru_A0514 at 609.006 kb on - strand, within Rru_A0514 at 609.114 kb on + strand, within Rru_A0514 at 609.114 kb on + strand, within Rru_A0514 at 609.114 kb on + strand, within Rru_A0514 at 609.180 kb on + strand, within Rru_A0514 at 609.180 kb on + strand, within Rru_A0514 at 609.180 kb on + strand, within Rru_A0514 at 609.219 kb on + strand, within Rru_A0514 at 609.219 kb on + strand, within Rru_A0514 at 609.234 kb on + strand, within Rru_A0514 at 609.234 kb on + strand, within Rru_A0514 at 609.234 kb on + strand, within Rru_A0514 at 609.344 kb on + strand at 609.449 kb on + strand at 609.450 kb on - strand at 609.450 kb on - strand at 609.525 kb on + strand at 609.525 kb on + strand at 609.526 kb on - strand at 609.526 kb on - strand at 609.711 kb on + strand, within Rru_A0515 at 609.711 kb on + strand, within Rru_A0515 at 609.712 kb on - strand, within Rru_A0515 at 609.712 kb on - strand, within Rru_A0515 at 609.712 kb on - strand, within Rru_A0515 at 609.712 kb on - strand, within Rru_A0515 at 609.930 kb on + strand, within Rru_A0515 at 610.105 kb on - strand, within Rru_A0515 at 610.175 kb on + strand, within Rru_A0515 at 610.176 kb on - strand, within Rru_A0515 at 610.181 kb on + strand, within Rru_A0515 at 610.182 kb on - strand, within Rru_A0515 at 610.350 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 607,293 + Rru_A0512 0.75 -1.0 607,316 - Rru_A0512 0.77 +0.0 607,406 + Rru_A0512 0.87 +0.2 607,406 + Rru_A0512 0.87 +0.3 607,495 - -2.0 607,509 - +0.0 607,509 - +0.0 607,509 - +0.0 607,556 + +0.6 607,556 + +0.0 607,556 + +0.3 607,557 - -0.2 607,561 + +0.3 607,561 + -1.0 607,561 + +0.0 607,562 - +0.0 607,583 + +0.0 607,666 + +0.6 607,667 - +0.0 607,667 - +0.0 607,667 - -0.9 607,667 - +0.0 607,667 - +0.0 607,667 - +0.0 607,696 + +0.8 607,697 - +0.0 607,942 + Rru_A0513 0.72 +0.5 607,942 + Rru_A0513 0.72 +1.0 607,942 + Rru_A0513 0.72 +0.5 607,942 + Rru_A0513 0.72 +0.6 607,943 - Rru_A0513 0.72 +0.0 607,943 - Rru_A0513 0.72 +0.0 607,943 - Rru_A0513 0.72 -0.6 607,943 - Rru_A0513 0.72 +0.0 608,041 + +0.4 608,094 + +1.1 608,095 - -1.6 608,095 - +0.2 608,105 + +0.8 608,105 + -2.6 608,105 + +0.0 608,106 - -0.2 608,106 - +0.0 608,106 - -1.0 608,168 - +0.0 608,213 + +0.0 608,295 + +0.0 608,736 + Rru_A0514 0.41 +0.0 608,775 + Rru_A0514 0.45 +0.3 608,775 + Rru_A0514 0.45 -0.6 608,946 - Rru_A0514 0.60 -2.9 608,946 - Rru_A0514 0.60 -1.2 608,946 - Rru_A0514 0.60 +0.0 609,005 + Rru_A0514 0.65 +1.0 609,005 + Rru_A0514 0.65 -2.1 609,006 - Rru_A0514 0.65 +0.0 609,006 - Rru_A0514 0.65 -3.2 609,114 + Rru_A0514 0.75 -0.7 609,114 + Rru_A0514 0.75 -2.4 609,114 + Rru_A0514 0.75 +1.0 609,180 + Rru_A0514 0.81 -1.7 609,180 + Rru_A0514 0.81 -0.8 609,180 + Rru_A0514 0.81 +0.0 609,219 + Rru_A0514 0.85 -3.3 609,219 + Rru_A0514 0.85 +0.0 609,234 + Rru_A0514 0.86 -2.1 609,234 + Rru_A0514 0.86 -2.0 609,234 + Rru_A0514 0.86 +0.0 609,344 + +0.0 609,449 + +0.0 609,450 - +0.0 609,450 - +1.2 609,525 + -2.0 609,525 + +0.0 609,526 - +0.0 609,526 - +0.0 609,711 + Rru_A0515 0.28 -1.6 609,711 + Rru_A0515 0.28 +0.0 609,712 - Rru_A0515 0.28 +0.0 609,712 - Rru_A0515 0.28 +0.0 609,712 - Rru_A0515 0.28 +0.0 609,712 - Rru_A0515 0.28 +0.0 609,930 + Rru_A0515 0.52 +0.0 610,105 - Rru_A0515 0.72 +0.0 610,175 + Rru_A0515 0.80 +0.0 610,176 - Rru_A0515 0.80 +0.0 610,181 + Rru_A0515 0.81 +0.0 610,182 - Rru_A0515 0.81 +0.0 610,350 + +0.0
Or see this region's nucleotide sequence