Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0510

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0508 and Rru_A0509 are separated by 264 nucleotidesRru_A0509 and Rru_A0510 are separated by 10 nucleotidesRru_A0510 and Rru_A0511 are separated by 12 nucleotides Rru_A0508: Rru_A0508 - Aminotransferase, class IV (NCBI), at 602,172 to 603,056 _A0508 Rru_A0509: Rru_A0509 - hypothetical protein (NCBI), at 603,321 to 603,644 _A0509 Rru_A0510: Rru_A0510 - hypothetical protein (NCBI), at 603,655 to 603,951 _A0510 Rru_A0511: Rru_A0511 - DEAD/DEAH box helicase (NCBI), at 603,964 to 606,573 _A0511 Position (kb) 603 604Strain fitness (log2 ratio) -1 0 1at 602.731 kb on + strand, within Rru_A0508at 602.731 kb on + strand, within Rru_A0508at 602.731 kb on + strand, within Rru_A0508at 602.732 kb on - strand, within Rru_A0508at 602.732 kb on - strand, within Rru_A0508at 602.749 kb on + strand, within Rru_A0508at 602.749 kb on + strand, within Rru_A0508at 602.750 kb on - strand, within Rru_A0508at 602.771 kb on - strand, within Rru_A0508at 602.915 kb on - strand, within Rru_A0508at 602.915 kb on - strand, within Rru_A0508at 602.949 kb on + strand, within Rru_A0508at 602.949 kb on + strand, within Rru_A0508at 602.950 kb on - strand, within Rru_A0508at 602.950 kb on - strand, within Rru_A0508at 603.010 kb on + strandat 603.010 kb on + strandat 603.011 kb on - strandat 603.012 kb on + strandat 603.013 kb on - strandat 603.013 kb on - strandat 603.131 kb on - strandat 603.245 kb on + strandat 603.245 kb on + strandat 603.246 kb on - strandat 603.249 kb on - strandat 603.249 kb on - strandat 603.254 kb on + strandat 603.254 kb on + strandat 603.279 kb on + strandat 603.279 kb on + strandat 603.279 kb on + strandat 603.280 kb on - strandat 603.320 kb on + strandat 603.321 kb on - strandat 603.321 kb on - strandat 603.510 kb on + strand, within Rru_A0509at 603.542 kb on + strand, within Rru_A0509at 603.543 kb on - strand, within Rru_A0509at 603.572 kb on + strand, within Rru_A0509at 603.573 kb on - strand, within Rru_A0509at 603.643 kb on - strandat 603.657 kb on - strandat 603.657 kb on - strandat 603.657 kb on - strandat 603.761 kb on + strand, within Rru_A0510at 603.761 kb on + strand, within Rru_A0510at 603.761 kb on + strand, within Rru_A0510at 603.761 kb on + strand, within Rru_A0510at 603.762 kb on - strand, within Rru_A0510at 603.863 kb on + strand, within Rru_A0510at 603.863 kb on + strand, within Rru_A0510at 603.864 kb on - strand, within Rru_A0510at 603.864 kb on - strand, within Rru_A0510at 603.887 kb on + strand, within Rru_A0510at 603.888 kb on - strand, within Rru_A0510at 603.888 kb on - strand, within Rru_A0510at 603.951 kb on + strandat 603.979 kb on + strandat 604.046 kb on - strandat 604.046 kb on - strandat 604.060 kb on + strandat 604.108 kb on + strandat 604.108 kb on + strandat 604.109 kb on - strandat 604.109 kb on - strandat 604.133 kb on + strandat 604.134 kb on - strandat 604.184 kb on - strandat 604.275 kb on + strand, within Rru_A0511at 604.276 kb on - strand, within Rru_A0511at 604.276 kb on - strand, within Rru_A0511at 604.276 kb on - strand, within Rru_A0511at 604.276 kb on - strand, within Rru_A0511at 604.276 kb on - strand, within Rru_A0511at 604.278 kb on - strand, within Rru_A0511at 604.290 kb on + strand, within Rru_A0511at 604.291 kb on - strand, within Rru_A0511at 604.291 kb on - strand, within Rru_A0511at 604.302 kb on + strand, within Rru_A0511at 604.303 kb on - strand, within Rru_A0511at 604.303 kb on - strand, within Rru_A0511at 604.305 kb on - strand, within Rru_A0511at 604.305 kb on - strand, within Rru_A0511at 604.351 kb on - strand, within Rru_A0511at 604.469 kb on + strand, within Rru_A0511at 604.555 kb on - strand, within Rru_A0511at 604.567 kb on + strand, within Rru_A0511at 604.604 kb on + strand, within Rru_A0511at 604.605 kb on - strand, within Rru_A0511at 604.633 kb on + strand, within Rru_A0511at 604.634 kb on - strand, within Rru_A0511at 604.727 kb on - strand, within Rru_A0511at 604.756 kb on + strand, within Rru_A0511at 604.757 kb on - strand, within Rru_A0511at 604.770 kb on + strand, within Rru_A0511at 604.776 kb on + strand, within Rru_A0511at 604.777 kb on - strand, within Rru_A0511at 604.788 kb on + strand, within Rru_A0511at 604.789 kb on - strand, within Rru_A0511at 604.790 kb on + strand, within Rru_A0511at 604.790 kb on + strand, within Rru_A0511at 604.790 kb on + strand, within Rru_A0511at 604.790 kb on + strand, within Rru_A0511at 604.790 kb on + strand, within Rru_A0511at 604.790 kb on + strand, within Rru_A0511at 604.790 kb on + strand, within Rru_A0511at 604.790 kb on + strand, within Rru_A0511at 604.790 kb on + strand, within Rru_A0511at 604.790 kb on + strand, within Rru_A0511at 604.791 kb on - strand, within Rru_A0511at 604.791 kb on - strand, within Rru_A0511at 604.791 kb on - strand, within Rru_A0511at 604.805 kb on + strand, within Rru_A0511at 604.805 kb on + strand, within Rru_A0511at 604.805 kb on + strand, within Rru_A0511at 604.806 kb on - strand, within Rru_A0511at 604.806 kb on - strand, within Rru_A0511at 604.806 kb on - strand, within Rru_A0511at 604.806 kb on - strand, within Rru_A0511at 604.806 kb on - strand, within Rru_A0511at 604.827 kb on + strand, within Rru_A0511at 604.877 kb on + strand, within Rru_A0511at 604.877 kb on + strand, within Rru_A0511at 604.877 kb on + strand, within Rru_A0511

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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602,731 + Rru_A0508 0.63 -0.5
602,731 + Rru_A0508 0.63 -0.5
602,731 + Rru_A0508 0.63 -0.0
602,732 - Rru_A0508 0.63 -0.0
602,732 - Rru_A0508 0.63 -0.0
602,749 + Rru_A0508 0.65 -0.5
602,749 + Rru_A0508 0.65 -0.6
602,750 - Rru_A0508 0.65 -0.0
602,771 - Rru_A0508 0.68 +1.0
602,915 - Rru_A0508 0.84 +0.7
602,915 - Rru_A0508 0.84 -0.0
602,949 + Rru_A0508 0.88 -0.0
602,949 + Rru_A0508 0.88 +0.5
602,950 - Rru_A0508 0.88 -0.1
602,950 - Rru_A0508 0.88 -0.0
603,010 + +0.3
603,010 + -0.0
603,011 - +0.2
603,012 + -0.0
603,013 - +0.7
603,013 - -0.0
603,131 - -0.0
603,245 + -0.5
603,245 + -0.0
603,246 - +0.6
603,249 - +0.3
603,249 - -1.6
603,254 + -1.6
603,254 + +0.4
603,279 + +1.6
603,279 + +0.9
603,279 + -0.0
603,280 - -0.0
603,320 + +0.3
603,321 - +1.5
603,321 - -0.0
603,510 + Rru_A0509 0.58 -0.0
603,542 + Rru_A0509 0.68 -0.0
603,543 - Rru_A0509 0.69 -0.0
603,572 + Rru_A0509 0.77 -0.0
603,573 - Rru_A0509 0.78 -0.1
603,643 - +0.3
603,657 - -0.1
603,657 - +0.2
603,657 - +0.8
603,761 + Rru_A0510 0.36 -0.0
603,761 + Rru_A0510 0.36 +0.3
603,761 + Rru_A0510 0.36 +0.7
603,761 + Rru_A0510 0.36 -0.0
603,762 - Rru_A0510 0.36 -0.0
603,863 + Rru_A0510 0.70 -0.0
603,863 + Rru_A0510 0.70 -0.5
603,864 - Rru_A0510 0.70 -0.0
603,864 - Rru_A0510 0.70 -1.1
603,887 + Rru_A0510 0.78 -0.1
603,888 - Rru_A0510 0.78 -0.0
603,888 - Rru_A0510 0.78 +0.2
603,951 + +0.6
603,979 + -0.0
604,046 - -0.0
604,046 - +0.7
604,060 + +0.1
604,108 + +1.1
604,108 + -0.0
604,109 - +0.3
604,109 - +0.3
604,133 + +0.7
604,134 - +0.5
604,184 - -1.2
604,275 + Rru_A0511 0.12 -0.0
604,276 - Rru_A0511 0.12 +1.4
604,276 - Rru_A0511 0.12 -0.0
604,276 - Rru_A0511 0.12 -0.0
604,276 - Rru_A0511 0.12 -1.0
604,276 - Rru_A0511 0.12 +0.2
604,278 - Rru_A0511 0.12 -0.0
604,290 + Rru_A0511 0.12 +1.3
604,291 - Rru_A0511 0.13 +0.0
604,291 - Rru_A0511 0.13 -0.0
604,302 + Rru_A0511 0.13 +0.4
604,303 - Rru_A0511 0.13 +0.3
604,303 - Rru_A0511 0.13 +0.1
604,305 - Rru_A0511 0.13 -0.0
604,305 - Rru_A0511 0.13 -0.7
604,351 - Rru_A0511 0.15 -0.3
604,469 + Rru_A0511 0.19 -0.0
604,555 - Rru_A0511 0.23 -0.0
604,567 + Rru_A0511 0.23 -0.0
604,604 + Rru_A0511 0.25 -0.0
604,605 - Rru_A0511 0.25 +0.4
604,633 + Rru_A0511 0.26 -0.0
604,634 - Rru_A0511 0.26 +0.4
604,727 - Rru_A0511 0.29 -0.1
604,756 + Rru_A0511 0.30 -0.0
604,757 - Rru_A0511 0.30 -0.0
604,770 + Rru_A0511 0.31 -0.0
604,776 + Rru_A0511 0.31 -0.0
604,777 - Rru_A0511 0.31 +1.0
604,788 + Rru_A0511 0.32 -0.0
604,789 - Rru_A0511 0.32 -0.1
604,790 + Rru_A0511 0.32 -0.0
604,790 + Rru_A0511 0.32 -0.0
604,790 + Rru_A0511 0.32 -0.0
604,790 + Rru_A0511 0.32 -0.4
604,790 + Rru_A0511 0.32 +0.4
604,790 + Rru_A0511 0.32 +0.1
604,790 + Rru_A0511 0.32 -1.7
604,790 + Rru_A0511 0.32 +0.4
604,790 + Rru_A0511 0.32 -0.0
604,790 + Rru_A0511 0.32 +0.5
604,791 - Rru_A0511 0.32 -0.0
604,791 - Rru_A0511 0.32 -0.2
604,791 - Rru_A0511 0.32 -0.0
604,805 + Rru_A0511 0.32 -0.0
604,805 + Rru_A0511 0.32 -0.0
604,805 + Rru_A0511 0.32 +0.6
604,806 - Rru_A0511 0.32 +0.5
604,806 - Rru_A0511 0.32 -0.1
604,806 - Rru_A0511 0.32 +0.8
604,806 - Rru_A0511 0.32 -0.0
604,806 - Rru_A0511 0.32 -0.0
604,827 + Rru_A0511 0.33 -0.0
604,877 + Rru_A0511 0.35 -1.6
604,877 + Rru_A0511 0.35 +0.3
604,877 + Rru_A0511 0.35 -0.1

Or see this region's nucleotide sequence