Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0505

Experiment: acetate; Light intensity 9 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0504 and Rru_A0505 are separated by 165 nucleotidesRru_A0505 and Rru_A0506 overlap by 4 nucleotides Rru_A0504: Rru_A0504 - Peptidase M23B (NCBI), at 593,863 to 595,122 _A0504 Rru_A0505: Rru_A0505 - Glycogen debranching enzyme GlgX (NCBI), at 595,288 to 597,432 _A0505 Rru_A0506: Rru_A0506 - Glycoside hydrolase (NCBI), at 597,429 to 599,249 _A0506 Position (kb) 595 596 597 598Strain fitness (log2 ratio) -2 -1 0 1 2at 594.549 kb on + strand, within Rru_A0504at 594.685 kb on + strand, within Rru_A0504at 594.685 kb on + strand, within Rru_A0504at 594.686 kb on - strand, within Rru_A0504at 594.696 kb on + strand, within Rru_A0504at 594.696 kb on + strand, within Rru_A0504at 594.696 kb on + strand, within Rru_A0504at 594.696 kb on + strand, within Rru_A0504at 594.696 kb on + strand, within Rru_A0504at 594.697 kb on - strand, within Rru_A0504at 594.865 kb on + strand, within Rru_A0504at 594.877 kb on + strand, within Rru_A0504at 594.877 kb on + strand, within Rru_A0504at 594.903 kb on + strand, within Rru_A0504at 594.903 kb on + strand, within Rru_A0504at 594.925 kb on + strand, within Rru_A0504at 594.925 kb on + strand, within Rru_A0504at 594.925 kb on + strand, within Rru_A0504at 594.925 kb on + strand, within Rru_A0504at 594.925 kb on + strand, within Rru_A0504at 594.925 kb on + strand, within Rru_A0504at 594.926 kb on - strand, within Rru_A0504at 594.943 kb on + strand, within Rru_A0504at 594.944 kb on - strand, within Rru_A0504at 594.944 kb on - strand, within Rru_A0504at 594.997 kb on + strandat 594.998 kb on - strandat 594.998 kb on - strandat 595.036 kb on + strandat 595.036 kb on + strandat 595.037 kb on - strandat 595.037 kb on - strandat 595.037 kb on - strandat 595.039 kb on + strandat 595.040 kb on - strandat 595.462 kb on + strandat 595.463 kb on - strandat 595.463 kb on - strandat 595.464 kb on + strandat 595.464 kb on + strandat 595.465 kb on - strandat 595.465 kb on - strandat 595.486 kb on + strandat 595.487 kb on - strandat 595.516 kb on + strand, within Rru_A0505at 595.516 kb on + strand, within Rru_A0505at 595.516 kb on + strand, within Rru_A0505at 595.516 kb on + strand, within Rru_A0505at 595.516 kb on + strand, within Rru_A0505at 595.516 kb on + strand, within Rru_A0505at 595.517 kb on - strand, within Rru_A0505at 595.517 kb on - strand, within Rru_A0505at 595.517 kb on - strand, within Rru_A0505at 595.517 kb on - strand, within Rru_A0505at 595.517 kb on - strand, within Rru_A0505at 595.517 kb on - strand, within Rru_A0505at 595.531 kb on + strand, within Rru_A0505at 595.532 kb on - strand, within Rru_A0505at 595.540 kb on + strand, within Rru_A0505at 595.540 kb on + strand, within Rru_A0505at 595.540 kb on + strand, within Rru_A0505at 595.541 kb on - strand, within Rru_A0505at 595.575 kb on + strand, within Rru_A0505at 595.575 kb on + strand, within Rru_A0505at 595.576 kb on - strand, within Rru_A0505at 595.576 kb on - strand, within Rru_A0505at 595.576 kb on - strand, within Rru_A0505at 595.576 kb on - strand, within Rru_A0505at 595.646 kb on - strand, within Rru_A0505at 595.646 kb on - strand, within Rru_A0505at 595.705 kb on - strand, within Rru_A0505at 595.705 kb on - strand, within Rru_A0505at 595.738 kb on - strand, within Rru_A0505at 595.738 kb on - strand, within Rru_A0505at 595.786 kb on + strand, within Rru_A0505at 595.787 kb on - strand, within Rru_A0505at 595.919 kb on + strand, within Rru_A0505at 595.919 kb on + strand, within Rru_A0505at 595.920 kb on - strand, within Rru_A0505at 595.920 kb on - strand, within Rru_A0505at 595.920 kb on - strand, within Rru_A0505at 595.920 kb on - strand, within Rru_A0505at 595.936 kb on + strand, within Rru_A0505at 595.936 kb on + strand, within Rru_A0505at 595.937 kb on - strand, within Rru_A0505at 595.937 kb on - strand, within Rru_A0505at 595.937 kb on - strand, within Rru_A0505at 595.937 kb on - strand, within Rru_A0505at 595.937 kb on - strand, within Rru_A0505at 595.937 kb on - strand, within Rru_A0505at 595.979 kb on - strand, within Rru_A0505at 595.979 kb on - strand, within Rru_A0505at 595.979 kb on - strand, within Rru_A0505at 595.979 kb on - strand, within Rru_A0505at 595.987 kb on + strand, within Rru_A0505at 595.989 kb on + strand, within Rru_A0505at 596.023 kb on + strand, within Rru_A0505at 596.023 kb on + strand, within Rru_A0505at 596.023 kb on + strand, within Rru_A0505at 596.023 kb on + strand, within Rru_A0505at 596.023 kb on + strand, within Rru_A0505at 596.023 kb on + strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.024 kb on - strand, within Rru_A0505at 596.113 kb on + strand, within Rru_A0505at 596.113 kb on + strand, within Rru_A0505at 596.113 kb on + strand, within Rru_A0505at 596.113 kb on + strand, within Rru_A0505at 596.114 kb on - strand, within Rru_A0505at 596.182 kb on + strand, within Rru_A0505at 596.183 kb on - strand, within Rru_A0505at 596.183 kb on - strand, within Rru_A0505at 596.183 kb on - strand, within Rru_A0505at 596.185 kb on + strand, within Rru_A0505at 596.185 kb on + strand, within Rru_A0505at 596.188 kb on + strand, within Rru_A0505at 596.189 kb on - strand, within Rru_A0505at 596.216 kb on - strand, within Rru_A0505at 596.518 kb on + strand, within Rru_A0505at 596.526 kb on + strand, within Rru_A0505at 596.527 kb on - strand, within Rru_A0505at 596.690 kb on - strand, within Rru_A0505at 596.799 kb on + strand, within Rru_A0505at 596.800 kb on - strand, within Rru_A0505at 596.800 kb on - strand, within Rru_A0505at 596.917 kb on + strand, within Rru_A0505at 597.228 kb on + strandat 597.228 kb on + strandat 597.228 kb on + strandat 597.306 kb on + strandat 597.715 kb on - strand, within Rru_A0506at 597.768 kb on + strand, within Rru_A0506at 597.768 kb on + strand, within Rru_A0506at 597.807 kb on + strand, within Rru_A0506at 597.807 kb on + strand, within Rru_A0506at 597.807 kb on + strand, within Rru_A0506at 597.807 kb on + strand, within Rru_A0506at 597.807 kb on + strand, within Rru_A0506at 597.808 kb on - strand, within Rru_A0506at 597.808 kb on - strand, within Rru_A0506at 597.808 kb on - strand, within Rru_A0506at 597.808 kb on - strand, within Rru_A0506at 597.909 kb on + strand, within Rru_A0506at 597.910 kb on - strand, within Rru_A0506at 597.946 kb on - strand, within Rru_A0506at 598.024 kb on - strand, within Rru_A0506at 598.026 kb on - strand, within Rru_A0506at 598.026 kb on - strand, within Rru_A0506at 598.026 kb on - strand, within Rru_A0506at 598.062 kb on + strand, within Rru_A0506at 598.180 kb on - strand, within Rru_A0506at 598.180 kb on - strand, within Rru_A0506at 598.242 kb on - strand, within Rru_A0506at 598.378 kb on - strand, within Rru_A0506at 598.400 kb on + strand, within Rru_A0506at 598.400 kb on + strand, within Rru_A0506at 598.401 kb on - strand, within Rru_A0506

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
remove
594,549 + Rru_A0504 0.54 +0.4
594,685 + Rru_A0504 0.65 -0.0
594,685 + Rru_A0504 0.65 -0.0
594,686 - Rru_A0504 0.65 +0.5
594,696 + Rru_A0504 0.66 -0.0
594,696 + Rru_A0504 0.66 -0.0
594,696 + Rru_A0504 0.66 -1.0
594,696 + Rru_A0504 0.66 -0.0
594,696 + Rru_A0504 0.66 +0.1
594,697 - Rru_A0504 0.66 +1.6
594,865 + Rru_A0504 0.80 -0.4
594,877 + Rru_A0504 0.80 -0.4
594,877 + Rru_A0504 0.80 -0.0
594,903 + Rru_A0504 0.83 -0.4
594,903 + Rru_A0504 0.83 -0.2
594,925 + Rru_A0504 0.84 -0.0
594,925 + Rru_A0504 0.84 +1.6
594,925 + Rru_A0504 0.84 -0.0
594,925 + Rru_A0504 0.84 +0.6
594,925 + Rru_A0504 0.84 +0.4
594,925 + Rru_A0504 0.84 +0.9
594,926 - Rru_A0504 0.84 +1.5
594,943 + Rru_A0504 0.86 -1.0
594,944 - Rru_A0504 0.86 -0.0
594,944 - Rru_A0504 0.86 -0.1
594,997 + -0.0
594,998 - -0.0
594,998 - -0.0
595,036 + +0.6
595,036 + -0.3
595,037 - -0.0
595,037 - +0.9
595,037 - -0.0
595,039 + +0.2
595,040 - -0.1
595,462 + -0.0
595,463 - -0.0
595,463 - +0.7
595,464 + -1.6
595,464 + -0.0
595,465 - +1.4
595,465 - -0.0
595,486 + -0.0
595,487 - -0.0
595,516 + Rru_A0505 0.11 -0.0
595,516 + Rru_A0505 0.11 -1.0
595,516 + Rru_A0505 0.11 +0.2
595,516 + Rru_A0505 0.11 -0.0
595,516 + Rru_A0505 0.11 -0.0
595,516 + Rru_A0505 0.11 +1.2
595,517 - Rru_A0505 0.11 +1.1
595,517 - Rru_A0505 0.11 -0.0
595,517 - Rru_A0505 0.11 -0.0
595,517 - Rru_A0505 0.11 +0.9
595,517 - Rru_A0505 0.11 -1.6
595,517 - Rru_A0505 0.11 +0.4
595,531 + Rru_A0505 0.11 -0.0
595,532 - Rru_A0505 0.11 +1.1
595,540 + Rru_A0505 0.12 +0.9
595,540 + Rru_A0505 0.12 +0.9
595,540 + Rru_A0505 0.12 +0.3
595,541 - Rru_A0505 0.12 +1.0
595,575 + Rru_A0505 0.13 -0.1
595,575 + Rru_A0505 0.13 -0.0
595,576 - Rru_A0505 0.13 -0.0
595,576 - Rru_A0505 0.13 -0.0
595,576 - Rru_A0505 0.13 -0.0
595,576 - Rru_A0505 0.13 +0.7
595,646 - Rru_A0505 0.17 -0.0
595,646 - Rru_A0505 0.17 -0.2
595,705 - Rru_A0505 0.19 +0.2
595,705 - Rru_A0505 0.19 +0.7
595,738 - Rru_A0505 0.21 +0.2
595,738 - Rru_A0505 0.21 -0.0
595,786 + Rru_A0505 0.23 +1.0
595,787 - Rru_A0505 0.23 +1.0
595,919 + Rru_A0505 0.29 -0.0
595,919 + Rru_A0505 0.29 -1.0
595,920 - Rru_A0505 0.29 +0.8
595,920 - Rru_A0505 0.29 +0.8
595,920 - Rru_A0505 0.29 -0.0
595,920 - Rru_A0505 0.29 +0.4
595,936 + Rru_A0505 0.30 -0.0
595,936 + Rru_A0505 0.30 +0.1
595,937 - Rru_A0505 0.30 -0.0
595,937 - Rru_A0505 0.30 +0.7
595,937 - Rru_A0505 0.30 -0.0
595,937 - Rru_A0505 0.30 +2.3
595,937 - Rru_A0505 0.30 -0.0
595,937 - Rru_A0505 0.30 -0.0
595,979 - Rru_A0505 0.32 +0.7
595,979 - Rru_A0505 0.32 +0.6
595,979 - Rru_A0505 0.32 -0.0
595,979 - Rru_A0505 0.32 +0.1
595,987 + Rru_A0505 0.33 -0.0
595,989 + Rru_A0505 0.33 +0.5
596,023 + Rru_A0505 0.34 +0.9
596,023 + Rru_A0505 0.34 +0.4
596,023 + Rru_A0505 0.34 +0.5
596,023 + Rru_A0505 0.34 -0.0
596,023 + Rru_A0505 0.34 +0.7
596,023 + Rru_A0505 0.34 +1.3
596,024 - Rru_A0505 0.34 +0.5
596,024 - Rru_A0505 0.34 -0.6
596,024 - Rru_A0505 0.34 +0.7
596,024 - Rru_A0505 0.34 +0.2
596,024 - Rru_A0505 0.34 +1.0
596,024 - Rru_A0505 0.34 +1.8
596,024 - Rru_A0505 0.34 -0.0
596,024 - Rru_A0505 0.34 +0.2
596,024 - Rru_A0505 0.34 -1.0
596,024 - Rru_A0505 0.34 +1.0
596,024 - Rru_A0505 0.34 +1.1
596,113 + Rru_A0505 0.38 +0.7
596,113 + Rru_A0505 0.38 -0.0
596,113 + Rru_A0505 0.38 -0.0
596,113 + Rru_A0505 0.38 +0.5
596,114 - Rru_A0505 0.39 -0.0
596,182 + Rru_A0505 0.42 -0.3
596,183 - Rru_A0505 0.42 -0.0
596,183 - Rru_A0505 0.42 +1.4
596,183 - Rru_A0505 0.42 -0.0
596,185 + Rru_A0505 0.42 +0.4
596,185 + Rru_A0505 0.42 -0.0
596,188 + Rru_A0505 0.42 -1.6
596,189 - Rru_A0505 0.42 +0.3
596,216 - Rru_A0505 0.43 -0.0
596,518 + Rru_A0505 0.57 -0.0
596,526 + Rru_A0505 0.58 +0.9
596,527 - Rru_A0505 0.58 -0.0
596,690 - Rru_A0505 0.65 +1.7
596,799 + Rru_A0505 0.70 -0.0
596,800 - Rru_A0505 0.70 +0.6
596,800 - Rru_A0505 0.70 +1.6
596,917 + Rru_A0505 0.76 +0.8
597,228 + -0.0
597,228 + +0.7
597,228 + +0.5
597,306 + +0.9
597,715 - Rru_A0506 0.16 +0.4
597,768 + Rru_A0506 0.19 -0.0
597,768 + Rru_A0506 0.19 -0.2
597,807 + Rru_A0506 0.21 -0.0
597,807 + Rru_A0506 0.21 -0.0
597,807 + Rru_A0506 0.21 -0.0
597,807 + Rru_A0506 0.21 +0.8
597,807 + Rru_A0506 0.21 +0.3
597,808 - Rru_A0506 0.21 -0.4
597,808 - Rru_A0506 0.21 -0.0
597,808 - Rru_A0506 0.21 +1.0
597,808 - Rru_A0506 0.21 +1.0
597,909 + Rru_A0506 0.26 +0.7
597,910 - Rru_A0506 0.26 -0.8
597,946 - Rru_A0506 0.28 -0.0
598,024 - Rru_A0506 0.33 +0.7
598,026 - Rru_A0506 0.33 -0.0
598,026 - Rru_A0506 0.33 +0.5
598,026 - Rru_A0506 0.33 +0.7
598,062 + Rru_A0506 0.35 -0.0
598,180 - Rru_A0506 0.41 -2.0
598,180 - Rru_A0506 0.41 +0.9
598,242 - Rru_A0506 0.45 +0.6
598,378 - Rru_A0506 0.52 +0.3
598,400 + Rru_A0506 0.53 +0.6
598,400 + Rru_A0506 0.53 +1.5
598,401 - Rru_A0506 0.53 +1.0

Or see this region's nucleotide sequence