Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0500 and Rru_A0501 are separated by 547 nucleotides Rru_A0501 and Rru_A0502 are separated by 345 nucleotides
Rru_A0500: Rru_A0500 - extracellular solute-binding protein, family 1 (NCBI), at 585,194 to 586,297
_A0500
Rru_A0501: Rru_A0501 - no description, at 586,845 to 586,994
_A0501
Rru_A0502: Rru_A0502 - hypothetical protein (NCBI), at 587,340 to 591,317
_A0502
Position (kb) 586
587 Strain fitness (log2 ratio) -1
0
1
2
3 at 585.873 kb on + strand, within Rru_A0500 at 585.873 kb on + strand, within Rru_A0500 at 585.873 kb on + strand, within Rru_A0500 at 585.876 kb on + strand, within Rru_A0500 at 585.876 kb on + strand, within Rru_A0500 at 585.877 kb on - strand, within Rru_A0500 at 585.877 kb on - strand, within Rru_A0500 at 585.944 kb on - strand, within Rru_A0500 at 586.028 kb on - strand, within Rru_A0500 at 586.100 kb on - strand, within Rru_A0500 at 586.100 kb on - strand, within Rru_A0500 at 586.107 kb on + strand, within Rru_A0500 at 586.107 kb on + strand, within Rru_A0500 at 586.108 kb on - strand, within Rru_A0500 at 586.108 kb on - strand, within Rru_A0500 at 586.284 kb on + strand at 586.285 kb on - strand at 586.324 kb on - strand at 586.324 kb on - strand at 586.324 kb on - strand at 586.363 kb on + strand at 586.364 kb on - strand at 586.379 kb on - strand at 586.534 kb on - strand at 586.592 kb on + strand at 586.632 kb on - strand at 586.632 kb on - strand at 586.632 kb on - strand at 586.700 kb on + strand at 586.700 kb on + strand at 586.701 kb on - strand at 586.701 kb on - strand at 586.752 kb on + strand at 586.753 kb on - strand at 586.789 kb on + strand at 586.958 kb on + strand, within Rru_A0501 at 587.082 kb on + strand at 587.082 kb on + strand at 587.082 kb on + strand at 587.083 kb on - strand at 587.083 kb on - strand at 587.146 kb on + strand at 587.315 kb on - strand at 587.318 kb on + strand at 587.319 kb on - strand at 587.369 kb on + strand at 587.369 kb on + strand at 587.369 kb on + strand at 587.370 kb on - strand at 587.370 kb on - strand at 587.370 kb on - strand at 587.370 kb on - strand at 587.461 kb on + strand at 587.461 kb on + strand at 587.464 kb on + strand at 587.465 kb on - strand at 587.548 kb on - strand at 587.881 kb on + strand, within Rru_A0502 at 587.881 kb on + strand, within Rru_A0502 at 587.881 kb on + strand, within Rru_A0502 at 587.881 kb on + strand, within Rru_A0502 at 587.881 kb on + strand, within Rru_A0502 at 587.882 kb on - strand, within Rru_A0502 at 587.949 kb on + strand, within Rru_A0502 at 587.950 kb on - strand, within Rru_A0502 at 587.950 kb on - strand, within Rru_A0502 at 587.950 kb on - strand, within Rru_A0502
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 585,873 + Rru_A0500 0.62 -0.0 585,873 + Rru_A0500 0.62 +0.4 585,873 + Rru_A0500 0.62 +0.8 585,876 + Rru_A0500 0.62 +0.3 585,876 + Rru_A0500 0.62 -0.5 585,877 - Rru_A0500 0.62 +0.1 585,877 - Rru_A0500 0.62 +0.3 585,944 - Rru_A0500 0.68 -0.2 586,028 - Rru_A0500 0.76 +0.7 586,100 - Rru_A0500 0.82 +0.2 586,100 - Rru_A0500 0.82 -0.0 586,107 + Rru_A0500 0.83 +0.8 586,107 + Rru_A0500 0.83 +0.7 586,108 - Rru_A0500 0.83 -0.0 586,108 - Rru_A0500 0.83 +0.2 586,284 + -0.0 586,285 - -0.0 586,324 - +2.2 586,324 - +2.5 586,324 - +2.8 586,363 + -0.1 586,364 - +2.1 586,379 - +2.0 586,534 - -0.0 586,592 + +0.8 586,632 - +1.1 586,632 - +1.3 586,632 - +1.6 586,700 + -0.0 586,700 + +0.4 586,701 - +1.8 586,701 - +2.0 586,752 + -0.0 586,753 - +0.4 586,789 + -0.0 586,958 + Rru_A0501 0.75 -0.0 587,082 + -1.1 587,082 + -1.6 587,082 + +0.4 587,083 - -0.0 587,083 - -0.8 587,146 + -0.0 587,315 - -0.0 587,318 + +0.2 587,319 - +0.3 587,369 + -0.0 587,369 + -0.1 587,369 + +0.7 587,370 - -0.0 587,370 - +0.3 587,370 - -0.0 587,370 - -0.0 587,461 + -1.0 587,461 + +0.3 587,464 + +0.2 587,465 - -0.0 587,548 - -0.0 587,881 + Rru_A0502 0.14 -0.3 587,881 + Rru_A0502 0.14 +0.1 587,881 + Rru_A0502 0.14 -0.5 587,881 + Rru_A0502 0.14 -0.9 587,881 + Rru_A0502 0.14 +0.4 587,882 - Rru_A0502 0.14 +1.8 587,949 + Rru_A0502 0.15 -0.0 587,950 - Rru_A0502 0.15 +0.5 587,950 - Rru_A0502 0.15 -0.0 587,950 - Rru_A0502 0.15 -0.6
Or see this region's nucleotide sequence