Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0494

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0493 and Rru_A0494 are separated by 4 nucleotidesRru_A0494 and Rru_A0495 are separated by 6 nucleotidesRru_A0495 and Rru_A0496 are separated by 127 nucleotidesRru_A0496 and Rru_A0497 are separated by 45 nucleotides Rru_A0493: Rru_A0493 - Phytoene desaturase (NCBI), at 578,808 to 580,331 _A0493 Rru_A0494: Rru_A0494 - Squalene/phytoene synthase (NCBI), at 580,336 to 581,364 _A0494 Rru_A0495: Rru_A0495 - hypothetical protein (NCBI), at 581,371 to 581,706 _A0495 Rru_A0496: Rru_A0496 - Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI), at 581,834 to 582,223 _A0496 Rru_A0497: Rru_A0497 - ABC transporter component (NCBI), at 582,269 to 583,369 _A0497 Position (kb) 580 581 582Strain fitness (log2 ratio) -3 -2 -1 0 1at 579.450 kb on + strand, within Rru_A0493at 579.451 kb on - strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.512 kb on + strand, within Rru_A0493at 579.513 kb on - strand, within Rru_A0493at 579.513 kb on - strand, within Rru_A0493at 579.513 kb on - strand, within Rru_A0493at 579.513 kb on - strand, within Rru_A0493at 579.568 kb on - strand, within Rru_A0493at 579.568 kb on - strand, within Rru_A0493at 579.569 kb on + strand, within Rru_A0493at 579.753 kb on + strand, within Rru_A0493at 579.798 kb on + strand, within Rru_A0493at 579.799 kb on - strand, within Rru_A0493at 579.900 kb on + strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.901 kb on - strand, within Rru_A0493at 579.960 kb on + strand, within Rru_A0493at 579.960 kb on + strand, within Rru_A0493at 579.960 kb on + strand, within Rru_A0493at 579.960 kb on + strand, within Rru_A0493at 579.960 kb on + strand, within Rru_A0493at 579.961 kb on - strand, within Rru_A0493at 579.961 kb on - strand, within Rru_A0493at 580.024 kb on - strand, within Rru_A0493at 580.202 kb on + strandat 580.227 kb on + strandat 580.227 kb on + strandat 580.227 kb on + strandat 580.298 kb on + strandat 580.329 kb on + strandat 580.330 kb on - strandat 580.330 kb on - strandat 580.360 kb on + strandat 580.361 kb on - strandat 580.361 kb on - strandat 580.366 kb on + strandat 580.366 kb on + strandat 580.366 kb on + strandat 580.366 kb on + strandat 580.366 kb on + strandat 580.366 kb on + strandat 580.367 kb on - strandat 580.367 kb on - strandat 580.367 kb on - strandat 580.459 kb on + strand, within Rru_A0494at 580.553 kb on - strand, within Rru_A0494at 580.599 kb on + strand, within Rru_A0494at 580.599 kb on + strand, within Rru_A0494at 580.867 kb on + strand, within Rru_A0494at 580.867 kb on + strand, within Rru_A0494at 580.868 kb on - strand, within Rru_A0494at 580.868 kb on - strand, within Rru_A0494at 580.868 kb on - strand, within Rru_A0494at 580.990 kb on + strand, within Rru_A0494at 580.990 kb on + strand, within Rru_A0494at 580.990 kb on + strand, within Rru_A0494at 580.991 kb on - strand, within Rru_A0494at 580.991 kb on - strand, within Rru_A0494at 581.065 kb on + strand, within Rru_A0494at 581.200 kb on + strand, within Rru_A0494at 581.200 kb on + strand, within Rru_A0494at 581.201 kb on - strand, within Rru_A0494at 581.201 kb on - strand, within Rru_A0494at 581.201 kb on - strand, within Rru_A0494at 581.412 kb on + strand, within Rru_A0495at 581.466 kb on - strand, within Rru_A0495at 581.527 kb on - strand, within Rru_A0495at 581.587 kb on + strand, within Rru_A0495at 581.588 kb on - strand, within Rru_A0495at 581.588 kb on - strand, within Rru_A0495at 581.590 kb on - strand, within Rru_A0495at 581.704 kb on + strandat 581.704 kb on + strandat 581.757 kb on + strandat 581.762 kb on + strandat 581.762 kb on + strandat 581.763 kb on - strandat 581.934 kb on - strand, within Rru_A0496at 581.934 kb on - strand, within Rru_A0496at 581.934 kb on - strand, within Rru_A0496at 582.222 kb on - strandat 582.222 kb on - strandat 582.270 kb on + strandat 582.270 kb on + strandat 582.270 kb on + strandat 582.270 kb on + strandat 582.270 kb on + strandat 582.271 kb on - strandat 582.271 kb on - strandat 582.271 kb on - strandat 582.271 kb on - strandat 582.291 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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579,450 + Rru_A0493 0.42 -0.0
579,451 - Rru_A0493 0.42 -0.0
579,512 + Rru_A0493 0.46 -0.0
579,512 + Rru_A0493 0.46 -1.7
579,512 + Rru_A0493 0.46 -0.0
579,512 + Rru_A0493 0.46 -3.7
579,512 + Rru_A0493 0.46 -0.3
579,512 + Rru_A0493 0.46 -3.3
579,513 - Rru_A0493 0.46 -0.0
579,513 - Rru_A0493 0.46 -0.0
579,513 - Rru_A0493 0.46 -0.0
579,513 - Rru_A0493 0.46 -0.0
579,568 - Rru_A0493 0.50 -2.0
579,568 - Rru_A0493 0.50 -0.0
579,569 + Rru_A0493 0.50 -2.6
579,753 + Rru_A0493 0.62 -3.7
579,798 + Rru_A0493 0.65 -2.8
579,799 - Rru_A0493 0.65 -0.0
579,900 + Rru_A0493 0.72 -0.0
579,901 - Rru_A0493 0.72 -0.0
579,901 - Rru_A0493 0.72 -3.3
579,901 - Rru_A0493 0.72 -0.0
579,901 - Rru_A0493 0.72 -1.8
579,901 - Rru_A0493 0.72 -2.1
579,901 - Rru_A0493 0.72 -0.0
579,901 - Rru_A0493 0.72 -1.0
579,960 + Rru_A0493 0.76 -3.6
579,960 + Rru_A0493 0.76 -0.0
579,960 + Rru_A0493 0.76 -1.0
579,960 + Rru_A0493 0.76 -1.7
579,960 + Rru_A0493 0.76 -2.6
579,961 - Rru_A0493 0.76 -0.0
579,961 - Rru_A0493 0.76 -1.0
580,024 - Rru_A0493 0.80 -1.1
580,202 + -1.0
580,227 + -0.0
580,227 + -0.0
580,227 + -1.6
580,298 + -0.0
580,329 + -0.0
580,330 - -3.6
580,330 - -0.0
580,360 + -0.0
580,361 - -1.6
580,361 - -0.0
580,366 + -3.2
580,366 + +0.4
580,366 + -0.0
580,366 + -0.0
580,366 + -0.0
580,366 + -0.0
580,367 - -1.0
580,367 - -1.0
580,367 - -1.8
580,459 + Rru_A0494 0.12 -0.0
580,553 - Rru_A0494 0.21 -1.0
580,599 + Rru_A0494 0.26 -0.0
580,599 + Rru_A0494 0.26 -2.9
580,867 + Rru_A0494 0.52 -0.6
580,867 + Rru_A0494 0.52 -1.0
580,868 - Rru_A0494 0.52 -2.9
580,868 - Rru_A0494 0.52 -0.0
580,868 - Rru_A0494 0.52 -0.0
580,990 + Rru_A0494 0.64 -0.0
580,990 + Rru_A0494 0.64 -0.0
580,990 + Rru_A0494 0.64 -2.4
580,991 - Rru_A0494 0.64 -1.6
580,991 - Rru_A0494 0.64 -2.0
581,065 + Rru_A0494 0.71 -0.0
581,200 + Rru_A0494 0.84 -1.8
581,200 + Rru_A0494 0.84 -0.0
581,201 - Rru_A0494 0.84 -0.0
581,201 - Rru_A0494 0.84 -1.5
581,201 - Rru_A0494 0.84 -0.0
581,412 + Rru_A0495 0.12 +0.1
581,466 - Rru_A0495 0.28 -0.0
581,527 - Rru_A0495 0.46 -0.0
581,587 + Rru_A0495 0.64 -0.0
581,588 - Rru_A0495 0.65 +0.5
581,588 - Rru_A0495 0.65 -1.0
581,590 - Rru_A0495 0.65 -0.0
581,704 + +0.3
581,704 + -0.1
581,757 + -0.0
581,762 + -1.2
581,762 + -0.0
581,763 - -0.0
581,934 - Rru_A0496 0.26 +0.6
581,934 - Rru_A0496 0.26 -0.0
581,934 - Rru_A0496 0.26 -0.0
582,222 - -0.0
582,222 - +0.7
582,270 + -0.0
582,270 + +1.7
582,270 + +0.1
582,270 + +1.2
582,270 + -0.0
582,271 - -0.3
582,271 - -2.6
582,271 - -0.0
582,271 - -0.0
582,291 - -0.0

Or see this region's nucleotide sequence