Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0488

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0487 and Rru_A0488 are separated by 336 nucleotidesRru_A0488 and Rru_A0489 are separated by 11 nucleotidesRru_A0489 and Rru_A0490 overlap by 11 nucleotides Rru_A0487: Rru_A0487 - Alpha/beta hydrolase fold (NCBI), at 571,949 to 572,881 _A0487 Rru_A0488: Rru_A0488 - TonB-dependent receptor (NCBI), at 573,218 to 575,266 _A0488 Rru_A0489: Rru_A0489 - Periplasmic binding protein (NCBI), at 575,278 to 576,222 _A0489 Rru_A0490: Rru_A0490 - transport system permease protein (NCBI), at 576,212 to 577,213 _A0490 Position (kb) 573 574 575 576Strain fitness (log2 ratio) -2 -1 0 1 2at 572.444 kb on + strand, within Rru_A0487at 572.444 kb on + strand, within Rru_A0487at 572.444 kb on + strand, within Rru_A0487at 572.444 kb on + strand, within Rru_A0487at 572.444 kb on + strand, within Rru_A0487at 572.444 kb on + strand, within Rru_A0487at 572.446 kb on + strand, within Rru_A0487at 572.446 kb on + strand, within Rru_A0487at 572.447 kb on - strand, within Rru_A0487at 572.447 kb on - strand, within Rru_A0487at 572.447 kb on - strand, within Rru_A0487at 572.483 kb on + strand, within Rru_A0487at 572.483 kb on + strand, within Rru_A0487at 572.483 kb on + strand, within Rru_A0487at 572.484 kb on - strand, within Rru_A0487at 572.484 kb on - strand, within Rru_A0487at 572.484 kb on - strand, within Rru_A0487at 572.484 kb on - strand, within Rru_A0487at 572.484 kb on - strand, within Rru_A0487at 572.484 kb on - strand, within Rru_A0487at 572.573 kb on + strand, within Rru_A0487at 572.573 kb on + strand, within Rru_A0487at 572.573 kb on + strand, within Rru_A0487at 572.573 kb on + strand, within Rru_A0487at 572.574 kb on - strand, within Rru_A0487at 572.574 kb on - strand, within Rru_A0487at 572.574 kb on - strand, within Rru_A0487at 572.574 kb on - strand, within Rru_A0487at 572.574 kb on - strand, within Rru_A0487at 572.574 kb on - strand, within Rru_A0487at 572.574 kb on - strand, within Rru_A0487at 572.574 kb on - strand, within Rru_A0487at 572.576 kb on + strand, within Rru_A0487at 572.577 kb on - strand, within Rru_A0487at 572.937 kb on - strandat 572.954 kb on - strandat 573.043 kb on - strandat 573.131 kb on + strandat 573.131 kb on + strandat 573.131 kb on + strandat 573.131 kb on + strandat 573.131 kb on + strandat 573.132 kb on - strandat 573.132 kb on - strandat 573.132 kb on - strandat 573.186 kb on + strandat 573.186 kb on + strandat 573.186 kb on + strandat 573.187 kb on - strandat 573.187 kb on - strandat 573.281 kb on + strandat 573.512 kb on + strand, within Rru_A0488at 573.513 kb on - strand, within Rru_A0488at 573.668 kb on + strand, within Rru_A0488at 573.998 kb on + strand, within Rru_A0488at 573.998 kb on + strand, within Rru_A0488at 574.106 kb on + strand, within Rru_A0488at 574.107 kb on - strand, within Rru_A0488at 574.107 kb on - strand, within Rru_A0488at 574.107 kb on - strand, within Rru_A0488at 574.107 kb on - strand, within Rru_A0488at 574.107 kb on - strand, within Rru_A0488at 574.118 kb on + strand, within Rru_A0488at 574.118 kb on + strand, within Rru_A0488at 574.119 kb on - strand, within Rru_A0488at 574.119 kb on - strand, within Rru_A0488at 574.119 kb on - strand, within Rru_A0488at 574.286 kb on + strand, within Rru_A0488at 574.457 kb on + strand, within Rru_A0488at 574.544 kb on - strand, within Rru_A0488at 574.559 kb on + strand, within Rru_A0488at 574.559 kb on + strand, within Rru_A0488at 574.560 kb on - strand, within Rru_A0488at 574.628 kb on + strand, within Rru_A0488at 574.629 kb on - strand, within Rru_A0488at 574.629 kb on - strand, within Rru_A0488at 574.757 kb on + strand, within Rru_A0488at 574.757 kb on + strand, within Rru_A0488at 574.757 kb on + strand, within Rru_A0488at 574.758 kb on - strand, within Rru_A0488at 574.758 kb on - strand, within Rru_A0488at 574.758 kb on - strand, within Rru_A0488at 574.762 kb on - strand, within Rru_A0488at 574.796 kb on + strand, within Rru_A0488at 574.796 kb on + strand, within Rru_A0488at 574.796 kb on + strand, within Rru_A0488at 574.796 kb on + strand, within Rru_A0488at 574.797 kb on - strand, within Rru_A0488at 574.797 kb on - strand, within Rru_A0488at 574.797 kb on - strand, within Rru_A0488at 574.798 kb on + strand, within Rru_A0488at 574.799 kb on - strand, within Rru_A0488at 574.799 kb on - strand, within Rru_A0488at 574.799 kb on - strand, within Rru_A0488at 574.913 kb on + strand, within Rru_A0488at 574.914 kb on - strand, within Rru_A0488at 574.914 kb on - strand, within Rru_A0488at 574.914 kb on - strand, within Rru_A0488at 574.931 kb on + strand, within Rru_A0488at 574.932 kb on - strand, within Rru_A0488at 574.932 kb on - strand, within Rru_A0488at 574.932 kb on - strand, within Rru_A0488at 574.932 kb on - strand, within Rru_A0488at 575.039 kb on + strand, within Rru_A0488at 575.054 kb on + strand, within Rru_A0488at 575.054 kb on + strand, within Rru_A0488at 575.111 kb on + strandat 575.111 kb on + strandat 575.111 kb on + strandat 575.111 kb on + strandat 575.111 kb on + strandat 575.112 kb on - strandat 575.112 kb on - strandat 575.112 kb on - strandat 575.139 kb on - strandat 575.139 kb on - strandat 575.139 kb on - strandat 575.166 kb on - strandat 575.166 kb on - strandat 575.198 kb on + strandat 575.199 kb on - strandat 575.199 kb on - strandat 575.264 kb on + strandat 575.264 kb on + strandat 575.264 kb on + strandat 575.819 kb on - strand, within Rru_A0489at 575.819 kb on - strand, within Rru_A0489at 575.819 kb on - strand, within Rru_A0489at 575.820 kb on + strand, within Rru_A0489at 575.820 kb on + strand, within Rru_A0489at 575.820 kb on + strand, within Rru_A0489at 575.820 kb on + strand, within Rru_A0489at 575.820 kb on + strand, within Rru_A0489at 575.821 kb on - strand, within Rru_A0489at 575.821 kb on - strand, within Rru_A0489at 575.821 kb on - strand, within Rru_A0489

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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572,444 + Rru_A0487 0.53 -0.2
572,444 + Rru_A0487 0.53 +0.0
572,444 + Rru_A0487 0.53 -0.3
572,444 + Rru_A0487 0.53 +0.0
572,444 + Rru_A0487 0.53 +0.0
572,444 + Rru_A0487 0.53 +0.0
572,446 + Rru_A0487 0.53 +0.0
572,446 + Rru_A0487 0.53 +0.0
572,447 - Rru_A0487 0.53 -1.0
572,447 - Rru_A0487 0.53 -0.9
572,447 - Rru_A0487 0.53 -1.0
572,483 + Rru_A0487 0.57 +0.0
572,483 + Rru_A0487 0.57 +0.0
572,483 + Rru_A0487 0.57 -1.0
572,484 - Rru_A0487 0.57 -0.8
572,484 - Rru_A0487 0.57 -0.2
572,484 - Rru_A0487 0.57 +0.0
572,484 - Rru_A0487 0.57 -1.1
572,484 - Rru_A0487 0.57 -0.5
572,484 - Rru_A0487 0.57 +0.0
572,573 + Rru_A0487 0.67 -0.3
572,573 + Rru_A0487 0.67 -0.1
572,573 + Rru_A0487 0.67 -1.0
572,573 + Rru_A0487 0.67 -2.2
572,574 - Rru_A0487 0.67 +0.1
572,574 - Rru_A0487 0.67 -1.3
572,574 - Rru_A0487 0.67 +0.0
572,574 - Rru_A0487 0.67 +0.0
572,574 - Rru_A0487 0.67 -0.8
572,574 - Rru_A0487 0.67 +0.0
572,574 - Rru_A0487 0.67 +0.0
572,574 - Rru_A0487 0.67 -1.0
572,576 + Rru_A0487 0.67 -1.5
572,577 - Rru_A0487 0.67 -1.2
572,937 - +1.0
572,954 - -1.0
573,043 - +1.3
573,131 + +0.0
573,131 + -1.1
573,131 + +2.0
573,131 + -0.2
573,131 + +0.0
573,132 - +0.4
573,132 - +0.0
573,132 - +0.0
573,186 + +2.0
573,186 + +0.6
573,186 + +0.0
573,187 - -1.0
573,187 - -1.0
573,281 + -1.0
573,512 + Rru_A0488 0.14 +0.0
573,513 - Rru_A0488 0.14 +0.0
573,668 + Rru_A0488 0.22 +0.0
573,998 + Rru_A0488 0.38 +1.1
573,998 + Rru_A0488 0.38 +0.0
574,106 + Rru_A0488 0.43 +0.0
574,107 - Rru_A0488 0.43 +0.6
574,107 - Rru_A0488 0.43 -0.1
574,107 - Rru_A0488 0.43 +1.3
574,107 - Rru_A0488 0.43 +1.3
574,107 - Rru_A0488 0.43 +0.0
574,118 + Rru_A0488 0.44 +0.0
574,118 + Rru_A0488 0.44 +0.7
574,119 - Rru_A0488 0.44 +0.8
574,119 - Rru_A0488 0.44 +0.0
574,119 - Rru_A0488 0.44 +0.0
574,286 + Rru_A0488 0.52 +0.0
574,457 + Rru_A0488 0.60 +0.0
574,544 - Rru_A0488 0.65 +0.0
574,559 + Rru_A0488 0.65 +0.6
574,559 + Rru_A0488 0.65 -2.0
574,560 - Rru_A0488 0.65 +0.0
574,628 + Rru_A0488 0.69 +0.8
574,629 - Rru_A0488 0.69 -0.7
574,629 - Rru_A0488 0.69 +0.0
574,757 + Rru_A0488 0.75 +1.8
574,757 + Rru_A0488 0.75 +0.6
574,757 + Rru_A0488 0.75 +0.0
574,758 - Rru_A0488 0.75 +1.0
574,758 - Rru_A0488 0.75 +0.0
574,758 - Rru_A0488 0.75 +0.0
574,762 - Rru_A0488 0.75 +0.3
574,796 + Rru_A0488 0.77 +0.0
574,796 + Rru_A0488 0.77 +0.0
574,796 + Rru_A0488 0.77 +0.0
574,796 + Rru_A0488 0.77 -1.6
574,797 - Rru_A0488 0.77 +1.1
574,797 - Rru_A0488 0.77 +0.0
574,797 - Rru_A0488 0.77 +1.4
574,798 + Rru_A0488 0.77 -1.0
574,799 - Rru_A0488 0.77 +0.0
574,799 - Rru_A0488 0.77 +0.0
574,799 - Rru_A0488 0.77 +0.2
574,913 + Rru_A0488 0.83 +0.0
574,914 - Rru_A0488 0.83 +0.0
574,914 - Rru_A0488 0.83 +0.0
574,914 - Rru_A0488 0.83 +0.0
574,931 + Rru_A0488 0.84 -1.0
574,932 - Rru_A0488 0.84 +0.0
574,932 - Rru_A0488 0.84 +0.0
574,932 - Rru_A0488 0.84 +2.0
574,932 - Rru_A0488 0.84 +0.2
575,039 + Rru_A0488 0.89 +0.0
575,054 + Rru_A0488 0.90 +0.6
575,054 + Rru_A0488 0.90 +0.0
575,111 + +0.0
575,111 + +0.5
575,111 + +1.1
575,111 + +1.3
575,111 + +0.0
575,112 - +0.9
575,112 - -0.2
575,112 - +0.9
575,139 - +0.0
575,139 - +0.8
575,139 - +0.0
575,166 - +0.0
575,166 - +0.0
575,198 + +0.7
575,199 - +0.8
575,199 - -1.0
575,264 + +0.0
575,264 + +0.0
575,264 + +1.1
575,819 - Rru_A0489 0.57 +0.0
575,819 - Rru_A0489 0.57 +0.0
575,819 - Rru_A0489 0.57 +0.0
575,820 + Rru_A0489 0.57 +1.5
575,820 + Rru_A0489 0.57 +1.0
575,820 + Rru_A0489 0.57 +0.7
575,820 + Rru_A0489 0.57 +1.2
575,820 + Rru_A0489 0.57 +0.7
575,821 - Rru_A0489 0.57 +0.0
575,821 - Rru_A0489 0.57 +1.0
575,821 - Rru_A0489 0.57 +0.7

Or see this region's nucleotide sequence