Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0486

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0485 and Rru_A0486 overlap by 4 nucleotidesRru_A0486 and Rru_A0487 are separated by 47 nucleotides Rru_A0485: Rru_A0485 - Magnesium chelatase ATPase subunit I (NCBI), at 568,903 to 570,087 _A0485 Rru_A0486: Rru_A0486 - von Willebrand factor, type A (NCBI), at 570,084 to 571,901 _A0486 Rru_A0487: Rru_A0487 - Alpha/beta hydrolase fold (NCBI), at 571,949 to 572,881 _A0487 Position (kb) 570 571 572Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 569.185 kb on - strand, within Rru_A0485at 569.434 kb on + strand, within Rru_A0485at 569.435 kb on - strand, within Rru_A0485at 569.476 kb on + strand, within Rru_A0485at 569.476 kb on + strand, within Rru_A0485at 569.476 kb on + strand, within Rru_A0485at 569.477 kb on - strand, within Rru_A0485at 569.477 kb on - strand, within Rru_A0485at 569.477 kb on - strand, within Rru_A0485at 569.479 kb on - strand, within Rru_A0485at 569.731 kb on + strand, within Rru_A0485at 569.732 kb on - strand, within Rru_A0485at 569.732 kb on - strand, within Rru_A0485at 569.845 kb on - strand, within Rru_A0485at 570.042 kb on + strandat 570.043 kb on - strandat 570.225 kb on + strandat 570.226 kb on - strandat 570.226 kb on - strandat 570.278 kb on + strand, within Rru_A0486at 570.278 kb on + strand, within Rru_A0486at 570.278 kb on + strand, within Rru_A0486at 570.278 kb on + strand, within Rru_A0486at 570.278 kb on + strand, within Rru_A0486at 570.278 kb on + strand, within Rru_A0486at 570.278 kb on + strand, within Rru_A0486at 570.279 kb on - strand, within Rru_A0486at 570.279 kb on - strand, within Rru_A0486at 570.279 kb on - strand, within Rru_A0486at 570.641 kb on + strand, within Rru_A0486at 571.446 kb on + strand, within Rru_A0486at 571.446 kb on + strand, within Rru_A0486at 571.447 kb on - strand, within Rru_A0486at 571.447 kb on - strand, within Rru_A0486at 571.447 kb on - strand, within Rru_A0486at 571.447 kb on - strand, within Rru_A0486at 571.836 kb on + strandat 571.836 kb on + strandat 571.836 kb on + strandat 571.868 kb on + strandat 571.868 kb on + strandat 571.868 kb on + strandat 571.869 kb on - strandat 571.869 kb on - strandat 571.869 kb on - strandat 571.934 kb on + strandat 571.934 kb on + strandat 571.934 kb on + strandat 571.934 kb on + strandat 571.934 kb on + strandat 571.934 kb on + strandat 571.934 kb on + strandat 571.934 kb on + strandat 571.934 kb on + strandat 571.935 kb on - strandat 571.935 kb on - strandat 571.935 kb on - strandat 571.935 kb on - strandat 571.935 kb on - strandat 571.935 kb on - strandat 571.935 kb on - strandat 571.935 kb on - strandat 571.935 kb on - strandat 571.935 kb on - strandat 571.935 kb on - strandat 572.444 kb on + strand, within Rru_A0487at 572.444 kb on + strand, within Rru_A0487at 572.444 kb on + strand, within Rru_A0487at 572.444 kb on + strand, within Rru_A0487at 572.444 kb on + strand, within Rru_A0487at 572.444 kb on + strand, within Rru_A0487at 572.446 kb on + strand, within Rru_A0487at 572.446 kb on + strand, within Rru_A0487at 572.447 kb on - strand, within Rru_A0487at 572.447 kb on - strand, within Rru_A0487at 572.447 kb on - strand, within Rru_A0487at 572.483 kb on + strand, within Rru_A0487at 572.483 kb on + strand, within Rru_A0487at 572.483 kb on + strand, within Rru_A0487at 572.484 kb on - strand, within Rru_A0487at 572.484 kb on - strand, within Rru_A0487at 572.484 kb on - strand, within Rru_A0487at 572.484 kb on - strand, within Rru_A0487at 572.484 kb on - strand, within Rru_A0487at 572.484 kb on - strand, within Rru_A0487at 572.573 kb on + strand, within Rru_A0487at 572.573 kb on + strand, within Rru_A0487at 572.573 kb on + strand, within Rru_A0487at 572.573 kb on + strand, within Rru_A0487at 572.574 kb on - strand, within Rru_A0487at 572.574 kb on - strand, within Rru_A0487at 572.574 kb on - strand, within Rru_A0487at 572.574 kb on - strand, within Rru_A0487at 572.574 kb on - strand, within Rru_A0487at 572.574 kb on - strand, within Rru_A0487at 572.574 kb on - strand, within Rru_A0487at 572.574 kb on - strand, within Rru_A0487at 572.576 kb on + strand, within Rru_A0487at 572.577 kb on - strand, within Rru_A0487

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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569,185 - Rru_A0485 0.24 -1.0
569,434 + Rru_A0485 0.45 -2.0
569,435 - Rru_A0485 0.45 +0.0
569,476 + Rru_A0485 0.48 +0.0
569,476 + Rru_A0485 0.48 -2.0
569,476 + Rru_A0485 0.48 +0.0
569,477 - Rru_A0485 0.48 +0.0
569,477 - Rru_A0485 0.48 +0.0
569,477 - Rru_A0485 0.48 -1.6
569,479 - Rru_A0485 0.49 +0.0
569,731 + Rru_A0485 0.70 -1.0
569,732 - Rru_A0485 0.70 -1.6
569,732 - Rru_A0485 0.70 -4.0
569,845 - Rru_A0485 0.79 -3.2
570,042 + -1.0
570,043 - +0.0
570,225 + -0.7
570,226 - +0.0
570,226 - -3.3
570,278 + Rru_A0486 0.11 -3.2
570,278 + Rru_A0486 0.11 +0.0
570,278 + Rru_A0486 0.11 +0.0
570,278 + Rru_A0486 0.11 +0.0
570,278 + Rru_A0486 0.11 +0.0
570,278 + Rru_A0486 0.11 -2.3
570,278 + Rru_A0486 0.11 +0.0
570,279 - Rru_A0486 0.11 +0.0
570,279 - Rru_A0486 0.11 -1.6
570,279 - Rru_A0486 0.11 -1.6
570,641 + Rru_A0486 0.31 -2.8
571,446 + Rru_A0486 0.75 -2.8
571,446 + Rru_A0486 0.75 +0.0
571,447 - Rru_A0486 0.75 -1.6
571,447 - Rru_A0486 0.75 -2.0
571,447 - Rru_A0486 0.75 -3.0
571,447 - Rru_A0486 0.75 +0.0
571,836 + -1.0
571,836 + -2.3
571,836 + -1.6
571,868 + +0.0
571,868 + +0.0
571,868 + -1.0
571,869 - +0.0
571,869 - +0.0
571,869 - +0.0
571,934 + +0.2
571,934 + -0.5
571,934 + -0.1
571,934 + +0.4
571,934 + -1.0
571,934 + +0.0
571,934 + +0.5
571,934 + -0.6
571,934 + +0.0
571,935 - +0.0
571,935 - -0.7
571,935 - +0.0
571,935 - +2.4
571,935 - +1.2
571,935 - +2.4
571,935 - +1.2
571,935 - -1.6
571,935 - +0.0
571,935 - +0.0
571,935 - +1.7
572,444 + Rru_A0487 0.53 -0.2
572,444 + Rru_A0487 0.53 +0.0
572,444 + Rru_A0487 0.53 -0.3
572,444 + Rru_A0487 0.53 +0.0
572,444 + Rru_A0487 0.53 +0.0
572,444 + Rru_A0487 0.53 +0.0
572,446 + Rru_A0487 0.53 +0.0
572,446 + Rru_A0487 0.53 +0.0
572,447 - Rru_A0487 0.53 -1.0
572,447 - Rru_A0487 0.53 -0.9
572,447 - Rru_A0487 0.53 -1.0
572,483 + Rru_A0487 0.57 +0.0
572,483 + Rru_A0487 0.57 +0.0
572,483 + Rru_A0487 0.57 -1.0
572,484 - Rru_A0487 0.57 -0.8
572,484 - Rru_A0487 0.57 -0.2
572,484 - Rru_A0487 0.57 +0.0
572,484 - Rru_A0487 0.57 -1.1
572,484 - Rru_A0487 0.57 -0.5
572,484 - Rru_A0487 0.57 +0.0
572,573 + Rru_A0487 0.67 -0.3
572,573 + Rru_A0487 0.67 -0.1
572,573 + Rru_A0487 0.67 -1.0
572,573 + Rru_A0487 0.67 -2.2
572,574 - Rru_A0487 0.67 +0.1
572,574 - Rru_A0487 0.67 -1.3
572,574 - Rru_A0487 0.67 +0.0
572,574 - Rru_A0487 0.67 +0.0
572,574 - Rru_A0487 0.67 -0.8
572,574 - Rru_A0487 0.67 +0.0
572,574 - Rru_A0487 0.67 +0.0
572,574 - Rru_A0487 0.67 -1.0
572,576 + Rru_A0487 0.67 -1.5
572,577 - Rru_A0487 0.67 -1.2

Or see this region's nucleotide sequence