Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0484 and Rru_A0485 are separated by 419 nucleotides Rru_A0485 and Rru_A0486 overlap by 4 nucleotides
Rru_A0484: Rru_A0484 - hypothetical protein (NCBI), at 567,488 to 568,483
_A0484
Rru_A0485: Rru_A0485 - Magnesium chelatase ATPase subunit I (NCBI), at 568,903 to 570,087
_A0485
Rru_A0486: Rru_A0486 - von Willebrand factor, type A (NCBI), at 570,084 to 571,901
_A0486
Position (kb) 568
569
570
571 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 567.957 kb on + strand, within Rru_A0484 at 568.027 kb on - strand, within Rru_A0484 at 568.154 kb on - strand, within Rru_A0484 at 568.154 kb on - strand, within Rru_A0484 at 568.156 kb on - strand, within Rru_A0484 at 568.218 kb on + strand, within Rru_A0484 at 568.309 kb on + strand, within Rru_A0484 at 568.309 kb on + strand, within Rru_A0484 at 568.310 kb on - strand, within Rru_A0484 at 568.312 kb on - strand, within Rru_A0484 at 568.414 kb on - strand at 568.414 kb on - strand at 568.728 kb on + strand at 568.729 kb on - strand at 568.729 kb on - strand at 568.761 kb on + strand at 568.804 kb on + strand at 568.804 kb on + strand at 568.804 kb on + strand at 568.805 kb on - strand at 568.805 kb on - strand at 568.805 kb on - strand at 568.805 kb on - strand at 568.805 kb on - strand at 568.805 kb on - strand at 568.910 kb on + strand at 568.943 kb on + strand at 568.943 kb on + strand at 568.943 kb on + strand at 568.943 kb on + strand at 568.944 kb on - strand at 568.944 kb on - strand at 569.028 kb on - strand, within Rru_A0485 at 569.185 kb on - strand, within Rru_A0485 at 569.434 kb on + strand, within Rru_A0485 at 569.435 kb on - strand, within Rru_A0485 at 569.476 kb on + strand, within Rru_A0485 at 569.476 kb on + strand, within Rru_A0485 at 569.476 kb on + strand, within Rru_A0485 at 569.477 kb on - strand, within Rru_A0485 at 569.477 kb on - strand, within Rru_A0485 at 569.477 kb on - strand, within Rru_A0485 at 569.479 kb on - strand, within Rru_A0485 at 569.731 kb on + strand, within Rru_A0485 at 569.732 kb on - strand, within Rru_A0485 at 569.732 kb on - strand, within Rru_A0485 at 569.845 kb on - strand, within Rru_A0485 at 570.042 kb on + strand at 570.043 kb on - strand at 570.225 kb on + strand at 570.226 kb on - strand at 570.226 kb on - strand at 570.278 kb on + strand, within Rru_A0486 at 570.278 kb on + strand, within Rru_A0486 at 570.278 kb on + strand, within Rru_A0486 at 570.278 kb on + strand, within Rru_A0486 at 570.278 kb on + strand, within Rru_A0486 at 570.278 kb on + strand, within Rru_A0486 at 570.278 kb on + strand, within Rru_A0486 at 570.279 kb on - strand, within Rru_A0486 at 570.279 kb on - strand, within Rru_A0486 at 570.279 kb on - strand, within Rru_A0486 at 570.641 kb on + strand, within Rru_A0486
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 567,957 + Rru_A0484 0.47 +1.7 568,027 - Rru_A0484 0.54 +1.6 568,154 - Rru_A0484 0.67 +0.0 568,154 - Rru_A0484 0.67 +2.0 568,156 - Rru_A0484 0.67 +1.2 568,218 + Rru_A0484 0.73 +2.7 568,309 + Rru_A0484 0.82 +0.0 568,309 + Rru_A0484 0.82 +2.4 568,310 - Rru_A0484 0.83 +3.2 568,312 - Rru_A0484 0.83 +1.0 568,414 - +0.0 568,414 - +0.0 568,728 + +4.0 568,729 - +0.0 568,729 - +0.0 568,761 + +1.2 568,804 + +0.0 568,804 + +1.3 568,804 + +0.0 568,805 - -2.0 568,805 - -1.2 568,805 - +0.0 568,805 - -0.2 568,805 - +0.0 568,805 - -1.0 568,910 + -2.1 568,943 + -1.6 568,943 + +0.3 568,943 + +0.0 568,943 + +0.4 568,944 - +0.0 568,944 - +0.0 569,028 - Rru_A0485 0.11 -4.6 569,185 - Rru_A0485 0.24 -1.0 569,434 + Rru_A0485 0.45 -2.0 569,435 - Rru_A0485 0.45 +0.0 569,476 + Rru_A0485 0.48 +0.0 569,476 + Rru_A0485 0.48 -2.0 569,476 + Rru_A0485 0.48 +0.0 569,477 - Rru_A0485 0.48 +0.0 569,477 - Rru_A0485 0.48 +0.0 569,477 - Rru_A0485 0.48 -1.6 569,479 - Rru_A0485 0.49 +0.0 569,731 + Rru_A0485 0.70 -1.0 569,732 - Rru_A0485 0.70 -1.6 569,732 - Rru_A0485 0.70 -4.0 569,845 - Rru_A0485 0.79 -3.2 570,042 + -1.0 570,043 - +0.0 570,225 + -0.7 570,226 - +0.0 570,226 - -3.3 570,278 + Rru_A0486 0.11 -3.2 570,278 + Rru_A0486 0.11 +0.0 570,278 + Rru_A0486 0.11 +0.0 570,278 + Rru_A0486 0.11 +0.0 570,278 + Rru_A0486 0.11 +0.0 570,278 + Rru_A0486 0.11 -2.3 570,278 + Rru_A0486 0.11 +0.0 570,279 - Rru_A0486 0.11 +0.0 570,279 - Rru_A0486 0.11 -1.6 570,279 - Rru_A0486 0.11 -1.6 570,641 + Rru_A0486 0.31 -2.8
Or see this region's nucleotide sequence