Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0482 and Rru_A0483 are separated by 355 nucleotides Rru_A0483 and Rru_A0484 are separated by 7 nucleotides Rru_A0484 and Rru_A0485 are separated by 419 nucleotides
Rru_A0482: Rru_A0482 - Protein of unknown function DUF1311 (NCBI), at 566,184 to 566,864
_A0482
Rru_A0483: Rru_A0483 - hypothetical protein (NCBI), at 567,220 to 567,480
_A0483
Rru_A0484: Rru_A0484 - hypothetical protein (NCBI), at 567,488 to 568,483
_A0484
Rru_A0485: Rru_A0485 - Magnesium chelatase ATPase subunit I (NCBI), at 568,903 to 570,087
_A0485
Position (kb) 567
568
569 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 566.669 kb on - strand, within Rru_A0482 at 566.669 kb on - strand, within Rru_A0482 at 566.707 kb on - strand, within Rru_A0482 at 566.810 kb on + strand at 566.810 kb on + strand at 566.811 kb on - strand at 566.811 kb on - strand at 566.840 kb on + strand at 566.840 kb on + strand at 566.841 kb on - strand at 566.841 kb on - strand at 566.864 kb on + strand at 566.864 kb on + strand at 566.864 kb on + strand at 566.864 kb on + strand at 566.864 kb on + strand at 566.865 kb on - strand at 566.865 kb on - strand at 566.865 kb on - strand at 566.897 kb on - strand at 566.993 kb on - strand at 566.994 kb on + strand at 566.994 kb on + strand at 566.995 kb on - strand at 567.093 kb on + strand at 567.093 kb on + strand at 567.094 kb on - strand at 567.122 kb on - strand at 567.215 kb on - strand at 567.215 kb on - strand at 567.403 kb on + strand, within Rru_A0483 at 567.404 kb on - strand, within Rru_A0483 at 567.404 kb on - strand, within Rru_A0483 at 567.432 kb on + strand, within Rru_A0483 at 567.438 kb on - strand, within Rru_A0483 at 567.630 kb on + strand, within Rru_A0484 at 567.631 kb on - strand, within Rru_A0484 at 567.631 kb on - strand, within Rru_A0484 at 567.957 kb on + strand, within Rru_A0484 at 568.027 kb on - strand, within Rru_A0484 at 568.154 kb on - strand, within Rru_A0484 at 568.154 kb on - strand, within Rru_A0484 at 568.156 kb on - strand, within Rru_A0484 at 568.218 kb on + strand, within Rru_A0484 at 568.309 kb on + strand, within Rru_A0484 at 568.309 kb on + strand, within Rru_A0484 at 568.310 kb on - strand, within Rru_A0484 at 568.312 kb on - strand, within Rru_A0484 at 568.414 kb on - strand at 568.414 kb on - strand at 568.728 kb on + strand at 568.729 kb on - strand at 568.729 kb on - strand at 568.761 kb on + strand at 568.804 kb on + strand at 568.804 kb on + strand at 568.804 kb on + strand at 568.805 kb on - strand at 568.805 kb on - strand at 568.805 kb on - strand at 568.805 kb on - strand at 568.805 kb on - strand at 568.805 kb on - strand at 568.910 kb on + strand at 568.943 kb on + strand at 568.943 kb on + strand at 568.943 kb on + strand at 568.943 kb on + strand at 568.944 kb on - strand at 568.944 kb on - strand at 569.028 kb on - strand, within Rru_A0485 at 569.185 kb on - strand, within Rru_A0485 at 569.434 kb on + strand, within Rru_A0485 at 569.435 kb on - strand, within Rru_A0485 at 569.476 kb on + strand, within Rru_A0485 at 569.476 kb on + strand, within Rru_A0485 at 569.476 kb on + strand, within Rru_A0485 at 569.477 kb on - strand, within Rru_A0485 at 569.477 kb on - strand, within Rru_A0485 at 569.477 kb on - strand, within Rru_A0485 at 569.479 kb on - strand, within Rru_A0485
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 566,669 - Rru_A0482 0.71 -1.0 566,669 - Rru_A0482 0.71 +0.0 566,707 - Rru_A0482 0.77 +0.0 566,810 + +0.9 566,810 + +0.7 566,811 - -0.2 566,811 - +0.0 566,840 + +1.0 566,840 + +0.7 566,841 - +0.1 566,841 - -0.3 566,864 + +1.5 566,864 + +1.2 566,864 + +0.0 566,864 + +0.0 566,864 + +1.1 566,865 - +0.5 566,865 - +0.0 566,865 - +0.0 566,897 - -0.3 566,993 - +0.1 566,994 + +0.0 566,994 + +1.2 566,995 - +0.0 567,093 + +1.2 567,093 + +1.6 567,094 - +0.1 567,122 - +0.0 567,215 - +0.0 567,215 - +0.7 567,403 + Rru_A0483 0.70 +0.0 567,404 - Rru_A0483 0.70 +1.0 567,404 - Rru_A0483 0.70 -1.6 567,432 + Rru_A0483 0.81 +0.0 567,438 - Rru_A0483 0.84 +0.5 567,630 + Rru_A0484 0.14 +0.0 567,631 - Rru_A0484 0.14 +2.5 567,631 - Rru_A0484 0.14 -1.0 567,957 + Rru_A0484 0.47 +1.7 568,027 - Rru_A0484 0.54 +1.6 568,154 - Rru_A0484 0.67 +0.0 568,154 - Rru_A0484 0.67 +2.0 568,156 - Rru_A0484 0.67 +1.2 568,218 + Rru_A0484 0.73 +2.7 568,309 + Rru_A0484 0.82 +0.0 568,309 + Rru_A0484 0.82 +2.4 568,310 - Rru_A0484 0.83 +3.2 568,312 - Rru_A0484 0.83 +1.0 568,414 - +0.0 568,414 - +0.0 568,728 + +4.0 568,729 - +0.0 568,729 - +0.0 568,761 + +1.2 568,804 + +0.0 568,804 + +1.3 568,804 + +0.0 568,805 - -2.0 568,805 - -1.2 568,805 - +0.0 568,805 - -0.2 568,805 - +0.0 568,805 - -1.0 568,910 + -2.1 568,943 + -1.6 568,943 + +0.3 568,943 + +0.0 568,943 + +0.4 568,944 - +0.0 568,944 - +0.0 569,028 - Rru_A0485 0.11 -4.6 569,185 - Rru_A0485 0.24 -1.0 569,434 + Rru_A0485 0.45 -2.0 569,435 - Rru_A0485 0.45 +0.0 569,476 + Rru_A0485 0.48 +0.0 569,476 + Rru_A0485 0.48 -2.0 569,476 + Rru_A0485 0.48 +0.0 569,477 - Rru_A0485 0.48 +0.0 569,477 - Rru_A0485 0.48 +0.0 569,477 - Rru_A0485 0.48 -1.6 569,479 - Rru_A0485 0.49 +0.0
Or see this region's nucleotide sequence