Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0481 and Rru_A0482 are separated by 244 nucleotides Rru_A0482 and Rru_A0483 are separated by 355 nucleotides Rru_A0483 and Rru_A0484 are separated by 7 nucleotides
Rru_A0481: Rru_A0481 - hypothetical protein (NCBI), at 564,071 to 565,939
_A0481
Rru_A0482: Rru_A0482 - Protein of unknown function DUF1311 (NCBI), at 566,184 to 566,864
_A0482
Rru_A0483: Rru_A0483 - hypothetical protein (NCBI), at 567,220 to 567,480
_A0483
Rru_A0484: Rru_A0484 - hypothetical protein (NCBI), at 567,488 to 568,483
_A0484
Position (kb) 566
567 Strain fitness (log2 ratio) -1
0
1
2 at 565.349 kb on - strand, within Rru_A0481 at 565.362 kb on + strand, within Rru_A0481 at 565.362 kb on + strand, within Rru_A0481 at 565.363 kb on - strand, within Rru_A0481 at 565.363 kb on - strand, within Rru_A0481 at 565.363 kb on - strand, within Rru_A0481 at 565.363 kb on - strand, within Rru_A0481 at 565.383 kb on + strand, within Rru_A0481 at 565.384 kb on - strand, within Rru_A0481 at 565.423 kb on - strand, within Rru_A0481 at 565.579 kb on - strand, within Rru_A0481 at 565.698 kb on + strand, within Rru_A0481 at 565.698 kb on + strand, within Rru_A0481 at 565.698 kb on + strand, within Rru_A0481 at 565.698 kb on + strand, within Rru_A0481 at 565.699 kb on - strand, within Rru_A0481 at 565.699 kb on - strand, within Rru_A0481 at 565.746 kb on + strand, within Rru_A0481 at 565.746 kb on + strand, within Rru_A0481 at 565.746 kb on + strand, within Rru_A0481 at 565.747 kb on - strand, within Rru_A0481 at 565.747 kb on - strand, within Rru_A0481 at 565.747 kb on - strand, within Rru_A0481 at 565.747 kb on - strand, within Rru_A0481 at 565.747 kb on - strand, within Rru_A0481 at 565.833 kb on - strand at 565.957 kb on - strand at 566.185 kb on + strand at 566.186 kb on - strand at 566.186 kb on - strand at 566.233 kb on + strand at 566.233 kb on + strand at 566.234 kb on - strand at 566.328 kb on - strand, within Rru_A0482 at 566.434 kb on + strand, within Rru_A0482 at 566.434 kb on + strand, within Rru_A0482 at 566.435 kb on - strand, within Rru_A0482 at 566.444 kb on + strand, within Rru_A0482 at 566.444 kb on + strand, within Rru_A0482 at 566.445 kb on - strand, within Rru_A0482 at 566.445 kb on - strand, within Rru_A0482 at 566.445 kb on - strand, within Rru_A0482 at 566.445 kb on - strand, within Rru_A0482 at 566.669 kb on - strand, within Rru_A0482 at 566.669 kb on - strand, within Rru_A0482 at 566.707 kb on - strand, within Rru_A0482 at 566.810 kb on + strand at 566.810 kb on + strand at 566.811 kb on - strand at 566.811 kb on - strand at 566.840 kb on + strand at 566.840 kb on + strand at 566.841 kb on - strand at 566.841 kb on - strand at 566.864 kb on + strand at 566.864 kb on + strand at 566.864 kb on + strand at 566.864 kb on + strand at 566.864 kb on + strand at 566.865 kb on - strand at 566.865 kb on - strand at 566.865 kb on - strand at 566.897 kb on - strand at 566.993 kb on - strand at 566.994 kb on + strand at 566.994 kb on + strand at 566.995 kb on - strand at 567.093 kb on + strand at 567.093 kb on + strand at 567.094 kb on - strand at 567.122 kb on - strand at 567.215 kb on - strand at 567.215 kb on - strand at 567.403 kb on + strand, within Rru_A0483 at 567.404 kb on - strand, within Rru_A0483 at 567.404 kb on - strand, within Rru_A0483 at 567.432 kb on + strand, within Rru_A0483 at 567.438 kb on - strand, within Rru_A0483 at 567.630 kb on + strand, within Rru_A0484 at 567.631 kb on - strand, within Rru_A0484 at 567.631 kb on - strand, within Rru_A0484
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 565,349 - Rru_A0481 0.68 +1.2 565,362 + Rru_A0481 0.69 +0.4 565,362 + Rru_A0481 0.69 +0.0 565,363 - Rru_A0481 0.69 -0.3 565,363 - Rru_A0481 0.69 +0.5 565,363 - Rru_A0481 0.69 -1.0 565,363 - Rru_A0481 0.69 +0.9 565,383 + Rru_A0481 0.70 +0.0 565,384 - Rru_A0481 0.70 -1.0 565,423 - Rru_A0481 0.72 +1.1 565,579 - Rru_A0481 0.81 +0.0 565,698 + Rru_A0481 0.87 +0.0 565,698 + Rru_A0481 0.87 -1.0 565,698 + Rru_A0481 0.87 +0.0 565,698 + Rru_A0481 0.87 +0.2 565,699 - Rru_A0481 0.87 +0.2 565,699 - Rru_A0481 0.87 -0.2 565,746 + Rru_A0481 0.90 +0.8 565,746 + Rru_A0481 0.90 +0.3 565,746 + Rru_A0481 0.90 +0.3 565,747 - Rru_A0481 0.90 +0.0 565,747 - Rru_A0481 0.90 +0.1 565,747 - Rru_A0481 0.90 +0.0 565,747 - Rru_A0481 0.90 -0.3 565,747 - Rru_A0481 0.90 +0.0 565,833 - +0.0 565,957 - +0.2 566,185 + +0.0 566,186 - -0.0 566,186 - +0.4 566,233 + +0.2 566,233 + +0.0 566,234 - +0.4 566,328 - Rru_A0482 0.21 -0.4 566,434 + Rru_A0482 0.37 +0.6 566,434 + Rru_A0482 0.37 +0.4 566,435 - Rru_A0482 0.37 -0.0 566,444 + Rru_A0482 0.38 +1.5 566,444 + Rru_A0482 0.38 +0.0 566,445 - Rru_A0482 0.38 +0.0 566,445 - Rru_A0482 0.38 +0.0 566,445 - Rru_A0482 0.38 -1.0 566,445 - Rru_A0482 0.38 +1.9 566,669 - Rru_A0482 0.71 -1.0 566,669 - Rru_A0482 0.71 +0.0 566,707 - Rru_A0482 0.77 +0.0 566,810 + +0.9 566,810 + +0.7 566,811 - -0.2 566,811 - +0.0 566,840 + +1.0 566,840 + +0.7 566,841 - +0.1 566,841 - -0.3 566,864 + +1.5 566,864 + +1.2 566,864 + +0.0 566,864 + +0.0 566,864 + +1.1 566,865 - +0.5 566,865 - +0.0 566,865 - +0.0 566,897 - -0.3 566,993 - +0.1 566,994 + +0.0 566,994 + +1.2 566,995 - +0.0 567,093 + +1.2 567,093 + +1.6 567,094 - +0.1 567,122 - +0.0 567,215 - +0.0 567,215 - +0.7 567,403 + Rru_A0483 0.70 +0.0 567,404 - Rru_A0483 0.70 +1.0 567,404 - Rru_A0483 0.70 -1.6 567,432 + Rru_A0483 0.81 +0.0 567,438 - Rru_A0483 0.84 +0.5 567,630 + Rru_A0484 0.14 +0.0 567,631 - Rru_A0484 0.14 +2.5 567,631 - Rru_A0484 0.14 -1.0
Or see this region's nucleotide sequence