Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0481

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0479 and Rru_A0480 are separated by 64 nucleotidesRru_A0480 and Rru_A0481 are separated by 123 nucleotidesRru_A0481 and Rru_A0482 are separated by 244 nucleotides Rru_A0479: Rru_A0479 - Radical SAM (NCBI), at 562,192 to 563,694 _A0479 Rru_A0480: Rru_A0480 - hypothetical protein (NCBI), at 563,759 to 563,947 _A0480 Rru_A0481: Rru_A0481 - hypothetical protein (NCBI), at 564,071 to 565,939 _A0481 Rru_A0482: Rru_A0482 - Protein of unknown function DUF1311 (NCBI), at 566,184 to 566,864 _A0482 Position (kb) 564 565 566Strain fitness (log2 ratio) -1 0 1 2at 563.098 kb on - strand, within Rru_A0479at 563.098 kb on - strand, within Rru_A0479at 563.205 kb on - strand, within Rru_A0479at 563.205 kb on - strand, within Rru_A0479at 563.210 kb on + strand, within Rru_A0479at 563.210 kb on + strand, within Rru_A0479at 563.210 kb on + strand, within Rru_A0479at 563.211 kb on - strand, within Rru_A0479at 563.211 kb on - strand, within Rru_A0479at 563.211 kb on - strand, within Rru_A0479at 563.247 kb on + strand, within Rru_A0479at 563.248 kb on - strand, within Rru_A0479at 563.577 kb on + strandat 563.578 kb on - strandat 563.578 kb on - strandat 563.584 kb on - strandat 563.591 kb on + strandat 563.592 kb on - strandat 563.649 kb on + strandat 563.710 kb on + strandat 563.731 kb on - strandat 563.950 kb on + strandat 563.950 kb on + strandat 563.951 kb on - strandat 563.951 kb on - strandat 563.951 kb on - strandat 563.951 kb on - strandat 563.964 kb on + strandat 563.965 kb on - strandat 564.050 kb on - strandat 564.083 kb on - strandat 564.167 kb on + strandat 564.168 kb on - strandat 564.186 kb on + strandat 564.298 kb on + strand, within Rru_A0481at 564.298 kb on + strand, within Rru_A0481at 564.299 kb on - strand, within Rru_A0481at 564.301 kb on - strand, within Rru_A0481at 564.301 kb on - strand, within Rru_A0481at 564.489 kb on + strand, within Rru_A0481at 564.489 kb on + strand, within Rru_A0481at 564.489 kb on + strand, within Rru_A0481at 564.489 kb on + strand, within Rru_A0481at 564.489 kb on + strand, within Rru_A0481at 564.490 kb on - strand, within Rru_A0481at 564.490 kb on - strand, within Rru_A0481at 564.490 kb on - strand, within Rru_A0481at 564.531 kb on + strand, within Rru_A0481at 564.531 kb on + strand, within Rru_A0481at 564.531 kb on + strand, within Rru_A0481at 564.532 kb on - strand, within Rru_A0481at 564.532 kb on - strand, within Rru_A0481at 564.532 kb on - strand, within Rru_A0481at 564.552 kb on + strand, within Rru_A0481at 564.674 kb on - strand, within Rru_A0481at 564.674 kb on - strand, within Rru_A0481at 564.732 kb on + strand, within Rru_A0481at 564.732 kb on + strand, within Rru_A0481at 564.777 kb on + strand, within Rru_A0481at 564.778 kb on - strand, within Rru_A0481at 564.778 kb on - strand, within Rru_A0481at 564.778 kb on - strand, within Rru_A0481at 564.783 kb on + strand, within Rru_A0481at 564.828 kb on + strand, within Rru_A0481at 564.829 kb on - strand, within Rru_A0481at 565.013 kb on + strand, within Rru_A0481at 565.013 kb on + strand, within Rru_A0481at 565.013 kb on + strand, within Rru_A0481at 565.014 kb on - strand, within Rru_A0481at 565.014 kb on - strand, within Rru_A0481at 565.349 kb on - strand, within Rru_A0481at 565.362 kb on + strand, within Rru_A0481at 565.362 kb on + strand, within Rru_A0481at 565.363 kb on - strand, within Rru_A0481at 565.363 kb on - strand, within Rru_A0481at 565.363 kb on - strand, within Rru_A0481at 565.363 kb on - strand, within Rru_A0481at 565.383 kb on + strand, within Rru_A0481at 565.384 kb on - strand, within Rru_A0481at 565.423 kb on - strand, within Rru_A0481at 565.579 kb on - strand, within Rru_A0481at 565.698 kb on + strand, within Rru_A0481at 565.698 kb on + strand, within Rru_A0481at 565.698 kb on + strand, within Rru_A0481at 565.698 kb on + strand, within Rru_A0481at 565.699 kb on - strand, within Rru_A0481at 565.699 kb on - strand, within Rru_A0481at 565.746 kb on + strand, within Rru_A0481at 565.746 kb on + strand, within Rru_A0481at 565.746 kb on + strand, within Rru_A0481at 565.747 kb on - strand, within Rru_A0481at 565.747 kb on - strand, within Rru_A0481at 565.747 kb on - strand, within Rru_A0481at 565.747 kb on - strand, within Rru_A0481at 565.747 kb on - strand, within Rru_A0481at 565.833 kb on - strandat 565.957 kb on - strandat 566.185 kb on + strandat 566.186 kb on - strandat 566.186 kb on - strandat 566.233 kb on + strandat 566.233 kb on + strandat 566.234 kb on - strandat 566.328 kb on - strand, within Rru_A0482at 566.434 kb on + strand, within Rru_A0482at 566.434 kb on + strand, within Rru_A0482at 566.435 kb on - strand, within Rru_A0482at 566.444 kb on + strand, within Rru_A0482at 566.444 kb on + strand, within Rru_A0482at 566.445 kb on - strand, within Rru_A0482at 566.445 kb on - strand, within Rru_A0482at 566.445 kb on - strand, within Rru_A0482at 566.445 kb on - strand, within Rru_A0482at 566.669 kb on - strand, within Rru_A0482at 566.669 kb on - strand, within Rru_A0482at 566.707 kb on - strand, within Rru_A0482at 566.810 kb on + strandat 566.810 kb on + strandat 566.811 kb on - strandat 566.811 kb on - strandat 566.840 kb on + strandat 566.840 kb on + strandat 566.841 kb on - strandat 566.841 kb on - strandat 566.864 kb on + strandat 566.864 kb on + strandat 566.864 kb on + strandat 566.864 kb on + strandat 566.864 kb on + strandat 566.865 kb on - strandat 566.865 kb on - strandat 566.865 kb on - strandat 566.897 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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563,098 - Rru_A0479 0.60 +1.3
563,098 - Rru_A0479 0.60 -1.0
563,205 - Rru_A0479 0.67 -0.2
563,205 - Rru_A0479 0.67 +0.0
563,210 + Rru_A0479 0.68 -0.1
563,210 + Rru_A0479 0.68 +0.0
563,210 + Rru_A0479 0.68 +0.1
563,211 - Rru_A0479 0.68 +0.1
563,211 - Rru_A0479 0.68 -0.3
563,211 - Rru_A0479 0.68 +0.0
563,247 + Rru_A0479 0.70 +0.0
563,248 - Rru_A0479 0.70 +0.2
563,577 + +1.0
563,578 - +0.0
563,578 - +0.0
563,584 - -0.2
563,591 + +0.0
563,592 - +0.3
563,649 + +1.3
563,710 + -1.0
563,731 - +0.1
563,950 + -0.2
563,950 + +0.0
563,951 - +0.0
563,951 - +1.0
563,951 - +0.3
563,951 - +0.7
563,964 + +0.0
563,965 - +0.0
564,050 - +0.8
564,083 - +0.4
564,167 + +0.0
564,168 - +0.4
564,186 + +0.0
564,298 + Rru_A0481 0.12 +0.0
564,298 + Rru_A0481 0.12 +0.2
564,299 - Rru_A0481 0.12 -0.4
564,301 - Rru_A0481 0.12 -1.0
564,301 - Rru_A0481 0.12 -0.4
564,489 + Rru_A0481 0.22 +0.0
564,489 + Rru_A0481 0.22 -0.9
564,489 + Rru_A0481 0.22 +0.2
564,489 + Rru_A0481 0.22 -0.3
564,489 + Rru_A0481 0.22 +0.5
564,490 - Rru_A0481 0.22 +0.0
564,490 - Rru_A0481 0.22 -0.1
564,490 - Rru_A0481 0.22 -1.0
564,531 + Rru_A0481 0.25 +0.1
564,531 + Rru_A0481 0.25 +0.0
564,531 + Rru_A0481 0.25 +0.3
564,532 - Rru_A0481 0.25 +0.0
564,532 - Rru_A0481 0.25 +0.0
564,532 - Rru_A0481 0.25 -0.2
564,552 + Rru_A0481 0.26 +0.4
564,674 - Rru_A0481 0.32 +0.3
564,674 - Rru_A0481 0.32 +0.6
564,732 + Rru_A0481 0.35 +0.7
564,732 + Rru_A0481 0.35 +0.6
564,777 + Rru_A0481 0.38 +0.3
564,778 - Rru_A0481 0.38 -0.2
564,778 - Rru_A0481 0.38 +0.0
564,778 - Rru_A0481 0.38 -0.4
564,783 + Rru_A0481 0.38 +0.3
564,828 + Rru_A0481 0.41 +0.0
564,829 - Rru_A0481 0.41 +0.0
565,013 + Rru_A0481 0.50 +1.7
565,013 + Rru_A0481 0.50 +1.0
565,013 + Rru_A0481 0.50 +0.7
565,014 - Rru_A0481 0.50 +0.0
565,014 - Rru_A0481 0.50 +0.1
565,349 - Rru_A0481 0.68 +1.2
565,362 + Rru_A0481 0.69 +0.4
565,362 + Rru_A0481 0.69 +0.0
565,363 - Rru_A0481 0.69 -0.3
565,363 - Rru_A0481 0.69 +0.5
565,363 - Rru_A0481 0.69 -1.0
565,363 - Rru_A0481 0.69 +0.9
565,383 + Rru_A0481 0.70 +0.0
565,384 - Rru_A0481 0.70 -1.0
565,423 - Rru_A0481 0.72 +1.1
565,579 - Rru_A0481 0.81 +0.0
565,698 + Rru_A0481 0.87 +0.0
565,698 + Rru_A0481 0.87 -1.0
565,698 + Rru_A0481 0.87 +0.0
565,698 + Rru_A0481 0.87 +0.2
565,699 - Rru_A0481 0.87 +0.2
565,699 - Rru_A0481 0.87 -0.2
565,746 + Rru_A0481 0.90 +0.8
565,746 + Rru_A0481 0.90 +0.3
565,746 + Rru_A0481 0.90 +0.3
565,747 - Rru_A0481 0.90 +0.0
565,747 - Rru_A0481 0.90 +0.1
565,747 - Rru_A0481 0.90 +0.0
565,747 - Rru_A0481 0.90 -0.3
565,747 - Rru_A0481 0.90 +0.0
565,833 - +0.0
565,957 - +0.2
566,185 + +0.0
566,186 - -0.0
566,186 - +0.4
566,233 + +0.2
566,233 + +0.0
566,234 - +0.4
566,328 - Rru_A0482 0.21 -0.4
566,434 + Rru_A0482 0.37 +0.6
566,434 + Rru_A0482 0.37 +0.4
566,435 - Rru_A0482 0.37 -0.0
566,444 + Rru_A0482 0.38 +1.5
566,444 + Rru_A0482 0.38 +0.0
566,445 - Rru_A0482 0.38 +0.0
566,445 - Rru_A0482 0.38 +0.0
566,445 - Rru_A0482 0.38 -1.0
566,445 - Rru_A0482 0.38 +1.9
566,669 - Rru_A0482 0.71 -1.0
566,669 - Rru_A0482 0.71 +0.0
566,707 - Rru_A0482 0.77 +0.0
566,810 + +0.9
566,810 + +0.7
566,811 - -0.2
566,811 - +0.0
566,840 + +1.0
566,840 + +0.7
566,841 - +0.1
566,841 - -0.3
566,864 + +1.5
566,864 + +1.2
566,864 + +0.0
566,864 + +0.0
566,864 + +1.1
566,865 - +0.5
566,865 - +0.0
566,865 - +0.0
566,897 - -0.3

Or see this region's nucleotide sequence