Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0479

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0478 and Rru_A0479 are separated by 91 nucleotidesRru_A0479 and Rru_A0480 are separated by 64 nucleotidesRru_A0480 and Rru_A0481 are separated by 123 nucleotides Rru_A0478: Rru_A0478 - Radical SAM (NCBI), at 560,754 to 562,100 _A0478 Rru_A0479: Rru_A0479 - Radical SAM (NCBI), at 562,192 to 563,694 _A0479 Rru_A0480: Rru_A0480 - hypothetical protein (NCBI), at 563,759 to 563,947 _A0480 Rru_A0481: Rru_A0481 - hypothetical protein (NCBI), at 564,071 to 565,939 _A0481 Position (kb) 562 563 564Strain fitness (log2 ratio) -2 -1 0 1at 561.236 kb on + strand, within Rru_A0478at 561.304 kb on - strand, within Rru_A0478at 561.304 kb on - strand, within Rru_A0478at 561.386 kb on + strand, within Rru_A0478at 561.387 kb on - strand, within Rru_A0478at 561.387 kb on - strand, within Rru_A0478at 561.387 kb on - strand, within Rru_A0478at 561.407 kb on - strand, within Rru_A0478at 561.410 kb on - strand, within Rru_A0478at 561.451 kb on + strand, within Rru_A0478at 561.451 kb on + strand, within Rru_A0478at 561.451 kb on + strand, within Rru_A0478at 561.452 kb on - strand, within Rru_A0478at 561.452 kb on - strand, within Rru_A0478at 561.565 kb on + strand, within Rru_A0478at 561.565 kb on + strand, within Rru_A0478at 561.566 kb on - strand, within Rru_A0478at 561.769 kb on + strand, within Rru_A0478at 561.769 kb on + strand, within Rru_A0478at 561.769 kb on + strand, within Rru_A0478at 561.770 kb on - strand, within Rru_A0478at 561.770 kb on - strand, within Rru_A0478at 561.814 kb on + strand, within Rru_A0478at 561.814 kb on + strand, within Rru_A0478at 561.815 kb on - strand, within Rru_A0478at 561.815 kb on - strand, within Rru_A0478at 561.815 kb on - strand, within Rru_A0478at 561.847 kb on + strand, within Rru_A0478at 561.848 kb on - strand, within Rru_A0478at 561.848 kb on - strand, within Rru_A0478at 561.848 kb on - strand, within Rru_A0478at 561.848 kb on - strand, within Rru_A0478at 561.868 kb on + strand, within Rru_A0478at 561.868 kb on + strand, within Rru_A0478at 561.868 kb on + strand, within Rru_A0478at 562.260 kb on - strandat 562.260 kb on - strandat 562.260 kb on - strandat 562.265 kb on + strandat 562.265 kb on + strandat 562.265 kb on + strandat 562.266 kb on - strandat 562.266 kb on - strandat 562.268 kb on + strandat 562.268 kb on + strandat 562.269 kb on - strandat 562.269 kb on - strandat 562.269 kb on - strandat 562.269 kb on - strandat 562.339 kb on - strandat 562.339 kb on - strandat 562.436 kb on + strand, within Rru_A0479at 562.436 kb on + strand, within Rru_A0479at 562.436 kb on + strand, within Rru_A0479at 562.437 kb on - strand, within Rru_A0479at 562.448 kb on + strand, within Rru_A0479at 562.716 kb on - strand, within Rru_A0479at 562.716 kb on - strand, within Rru_A0479at 562.716 kb on - strand, within Rru_A0479at 562.751 kb on + strand, within Rru_A0479at 562.751 kb on + strand, within Rru_A0479at 562.751 kb on + strand, within Rru_A0479at 562.752 kb on - strand, within Rru_A0479at 562.752 kb on - strand, within Rru_A0479at 562.752 kb on - strand, within Rru_A0479at 562.888 kb on - strand, within Rru_A0479at 563.098 kb on - strand, within Rru_A0479at 563.098 kb on - strand, within Rru_A0479at 563.205 kb on - strand, within Rru_A0479at 563.205 kb on - strand, within Rru_A0479at 563.210 kb on + strand, within Rru_A0479at 563.210 kb on + strand, within Rru_A0479at 563.210 kb on + strand, within Rru_A0479at 563.211 kb on - strand, within Rru_A0479at 563.211 kb on - strand, within Rru_A0479at 563.211 kb on - strand, within Rru_A0479at 563.247 kb on + strand, within Rru_A0479at 563.248 kb on - strand, within Rru_A0479at 563.577 kb on + strandat 563.578 kb on - strandat 563.578 kb on - strandat 563.584 kb on - strandat 563.591 kb on + strandat 563.592 kb on - strandat 563.649 kb on + strandat 563.710 kb on + strandat 563.731 kb on - strandat 563.950 kb on + strandat 563.950 kb on + strandat 563.951 kb on - strandat 563.951 kb on - strandat 563.951 kb on - strandat 563.951 kb on - strandat 563.964 kb on + strandat 563.965 kb on - strandat 564.050 kb on - strandat 564.083 kb on - strandat 564.167 kb on + strandat 564.168 kb on - strandat 564.186 kb on + strandat 564.298 kb on + strand, within Rru_A0481at 564.298 kb on + strand, within Rru_A0481at 564.299 kb on - strand, within Rru_A0481at 564.301 kb on - strand, within Rru_A0481at 564.301 kb on - strand, within Rru_A0481at 564.489 kb on + strand, within Rru_A0481at 564.489 kb on + strand, within Rru_A0481at 564.489 kb on + strand, within Rru_A0481at 564.489 kb on + strand, within Rru_A0481at 564.489 kb on + strand, within Rru_A0481at 564.490 kb on - strand, within Rru_A0481at 564.490 kb on - strand, within Rru_A0481at 564.490 kb on - strand, within Rru_A0481at 564.531 kb on + strand, within Rru_A0481at 564.531 kb on + strand, within Rru_A0481at 564.531 kb on + strand, within Rru_A0481at 564.532 kb on - strand, within Rru_A0481at 564.532 kb on - strand, within Rru_A0481at 564.532 kb on - strand, within Rru_A0481at 564.552 kb on + strand, within Rru_A0481at 564.674 kb on - strand, within Rru_A0481at 564.674 kb on - strand, within Rru_A0481

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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561,236 + Rru_A0478 0.36 -1.6
561,304 - Rru_A0478 0.41 -0.0
561,304 - Rru_A0478 0.41 -0.0
561,386 + Rru_A0478 0.47 -0.2
561,387 - Rru_A0478 0.47 -0.0
561,387 - Rru_A0478 0.47 +0.2
561,387 - Rru_A0478 0.47 -0.0
561,407 - Rru_A0478 0.48 -0.3
561,410 - Rru_A0478 0.49 +0.5
561,451 + Rru_A0478 0.52 +0.2
561,451 + Rru_A0478 0.52 +0.3
561,451 + Rru_A0478 0.52 -0.2
561,452 - Rru_A0478 0.52 +0.0
561,452 - Rru_A0478 0.52 -0.0
561,565 + Rru_A0478 0.60 -0.0
561,565 + Rru_A0478 0.60 -0.0
561,566 - Rru_A0478 0.60 -0.0
561,769 + Rru_A0478 0.75 +0.5
561,769 + Rru_A0478 0.75 -0.0
561,769 + Rru_A0478 0.75 -0.0
561,770 - Rru_A0478 0.75 -0.0
561,770 - Rru_A0478 0.75 +0.4
561,814 + Rru_A0478 0.79 -1.0
561,814 + Rru_A0478 0.79 -1.6
561,815 - Rru_A0478 0.79 -0.0
561,815 - Rru_A0478 0.79 +0.9
561,815 - Rru_A0478 0.79 -2.7
561,847 + Rru_A0478 0.81 -0.0
561,848 - Rru_A0478 0.81 -0.0
561,848 - Rru_A0478 0.81 +1.0
561,848 - Rru_A0478 0.81 -0.0
561,848 - Rru_A0478 0.81 +0.0
561,868 + Rru_A0478 0.83 -0.0
561,868 + Rru_A0478 0.83 +0.1
561,868 + Rru_A0478 0.83 +0.5
562,260 - +0.8
562,260 - +0.0
562,260 - +0.1
562,265 + +0.4
562,265 + +0.0
562,265 + -0.1
562,266 - +0.4
562,266 - +0.0
562,268 + +0.0
562,268 + +0.0
562,269 - +0.5
562,269 - +0.0
562,269 - +0.0
562,269 - +0.0
562,339 - +0.6
562,339 - +0.7
562,436 + Rru_A0479 0.16 -0.0
562,436 + Rru_A0479 0.16 +0.0
562,436 + Rru_A0479 0.16 +0.7
562,437 - Rru_A0479 0.16 +1.0
562,448 + Rru_A0479 0.17 +0.0
562,716 - Rru_A0479 0.35 +0.0
562,716 - Rru_A0479 0.35 -0.0
562,716 - Rru_A0479 0.35 +0.4
562,751 + Rru_A0479 0.37 +0.1
562,751 + Rru_A0479 0.37 -1.0
562,751 + Rru_A0479 0.37 +0.0
562,752 - Rru_A0479 0.37 +0.0
562,752 - Rru_A0479 0.37 +0.9
562,752 - Rru_A0479 0.37 +1.0
562,888 - Rru_A0479 0.46 -0.3
563,098 - Rru_A0479 0.60 +1.3
563,098 - Rru_A0479 0.60 -1.0
563,205 - Rru_A0479 0.67 -0.2
563,205 - Rru_A0479 0.67 +0.0
563,210 + Rru_A0479 0.68 -0.1
563,210 + Rru_A0479 0.68 +0.0
563,210 + Rru_A0479 0.68 +0.1
563,211 - Rru_A0479 0.68 +0.1
563,211 - Rru_A0479 0.68 -0.3
563,211 - Rru_A0479 0.68 +0.0
563,247 + Rru_A0479 0.70 +0.0
563,248 - Rru_A0479 0.70 +0.2
563,577 + +1.0
563,578 - +0.0
563,578 - +0.0
563,584 - -0.2
563,591 + +0.0
563,592 - +0.3
563,649 + +1.3
563,710 + -1.0
563,731 - +0.1
563,950 + -0.2
563,950 + +0.0
563,951 - +0.0
563,951 - +1.0
563,951 - +0.3
563,951 - +0.7
563,964 + +0.0
563,965 - +0.0
564,050 - +0.8
564,083 - +0.4
564,167 + +0.0
564,168 - +0.4
564,186 + +0.0
564,298 + Rru_A0481 0.12 +0.0
564,298 + Rru_A0481 0.12 +0.2
564,299 - Rru_A0481 0.12 -0.4
564,301 - Rru_A0481 0.12 -1.0
564,301 - Rru_A0481 0.12 -0.4
564,489 + Rru_A0481 0.22 +0.0
564,489 + Rru_A0481 0.22 -0.9
564,489 + Rru_A0481 0.22 +0.2
564,489 + Rru_A0481 0.22 -0.3
564,489 + Rru_A0481 0.22 +0.5
564,490 - Rru_A0481 0.22 +0.0
564,490 - Rru_A0481 0.22 -0.1
564,490 - Rru_A0481 0.22 -1.0
564,531 + Rru_A0481 0.25 +0.1
564,531 + Rru_A0481 0.25 +0.0
564,531 + Rru_A0481 0.25 +0.3
564,532 - Rru_A0481 0.25 +0.0
564,532 - Rru_A0481 0.25 +0.0
564,532 - Rru_A0481 0.25 -0.2
564,552 + Rru_A0481 0.26 +0.4
564,674 - Rru_A0481 0.32 +0.3
564,674 - Rru_A0481 0.32 +0.6

Or see this region's nucleotide sequence