Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0474

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0473 and Rru_A0474 are separated by 40 nucleotidesRru_A0474 and Rru_A0475 are separated by 11 nucleotides Rru_A0473: Rru_A0473 - Peptidoglycan glycosyltransferase (NCBI), at 554,626 to 556,671 _A0473 Rru_A0474: Rru_A0474 - Zinc-containing alcohol dehydrogenase superfamily (NCBI), at 556,712 to 557,734 _A0474 Rru_A0475: Rru_A0475 - NADH:flavin oxidoreductase/NADH oxidase (NCBI), at 557,746 to 558,843 _A0475 Position (kb) 556 557 558Strain fitness (log2 ratio) -1 0 1 2at 556.847 kb on - strand, within Rru_A0474at 556.847 kb on - strand, within Rru_A0474at 556.847 kb on - strand, within Rru_A0474at 556.902 kb on - strand, within Rru_A0474at 556.976 kb on - strand, within Rru_A0474at 556.976 kb on - strand, within Rru_A0474at 556.978 kb on - strand, within Rru_A0474at 556.978 kb on - strand, within Rru_A0474at 556.978 kb on - strand, within Rru_A0474at 556.978 kb on - strand, within Rru_A0474at 556.978 kb on - strand, within Rru_A0474at 557.070 kb on + strand, within Rru_A0474at 557.070 kb on + strand, within Rru_A0474at 557.071 kb on - strand, within Rru_A0474at 557.169 kb on + strand, within Rru_A0474at 557.170 kb on - strand, within Rru_A0474at 557.170 kb on - strand, within Rru_A0474at 557.322 kb on + strand, within Rru_A0474at 557.322 kb on + strand, within Rru_A0474at 557.322 kb on + strand, within Rru_A0474at 557.322 kb on + strand, within Rru_A0474at 557.322 kb on + strand, within Rru_A0474at 557.323 kb on - strand, within Rru_A0474at 557.323 kb on - strand, within Rru_A0474at 557.323 kb on - strand, within Rru_A0474at 557.422 kb on - strand, within Rru_A0474at 557.422 kb on - strand, within Rru_A0474at 557.438 kb on - strand, within Rru_A0474at 557.439 kb on + strand, within Rru_A0474at 557.439 kb on + strand, within Rru_A0474at 557.440 kb on - strand, within Rru_A0474at 557.544 kb on + strand, within Rru_A0474at 557.575 kb on + strand, within Rru_A0474at 557.575 kb on + strand, within Rru_A0474at 557.575 kb on + strand, within Rru_A0474at 557.575 kb on + strand, within Rru_A0474at 557.576 kb on - strand, within Rru_A0474at 557.576 kb on - strand, within Rru_A0474at 557.577 kb on + strand, within Rru_A0474at 557.577 kb on + strand, within Rru_A0474at 557.577 kb on + strand, within Rru_A0474at 557.577 kb on + strand, within Rru_A0474at 557.577 kb on + strand, within Rru_A0474at 557.578 kb on - strand, within Rru_A0474at 557.578 kb on - strand, within Rru_A0474at 557.578 kb on - strand, within Rru_A0474at 557.578 kb on - strand, within Rru_A0474at 557.578 kb on - strand, within Rru_A0474at 557.747 kb on + strandat 557.747 kb on + strandat 557.783 kb on + strandat 557.783 kb on + strandat 557.783 kb on + strandat 557.783 kb on + strandat 557.783 kb on + strandat 557.783 kb on + strandat 557.783 kb on + strandat 557.783 kb on + strandat 557.784 kb on - strandat 557.784 kb on - strandat 557.784 kb on - strandat 557.784 kb on - strandat 557.784 kb on - strandat 557.804 kb on + strandat 557.804 kb on + strandat 557.805 kb on - strandat 557.826 kb on + strandat 557.880 kb on - strand, within Rru_A0475at 557.880 kb on - strand, within Rru_A0475at 557.880 kb on - strand, within Rru_A0475at 557.964 kb on + strand, within Rru_A0475at 557.965 kb on - strand, within Rru_A0475at 557.966 kb on + strand, within Rru_A0475at 557.966 kb on + strand, within Rru_A0475at 557.966 kb on + strand, within Rru_A0475at 557.966 kb on + strand, within Rru_A0475at 557.966 kb on + strand, within Rru_A0475at 557.966 kb on + strand, within Rru_A0475at 557.966 kb on + strand, within Rru_A0475at 557.966 kb on + strand, within Rru_A0475at 557.966 kb on + strand, within Rru_A0475at 557.966 kb on + strand, within Rru_A0475at 557.966 kb on + strand, within Rru_A0475at 557.966 kb on + strand, within Rru_A0475at 557.966 kb on + strand, within Rru_A0475at 557.967 kb on - strand, within Rru_A0475at 557.967 kb on - strand, within Rru_A0475at 557.967 kb on - strand, within Rru_A0475at 557.967 kb on - strand, within Rru_A0475at 557.967 kb on - strand, within Rru_A0475at 557.967 kb on - strand, within Rru_A0475at 557.967 kb on - strand, within Rru_A0475at 557.967 kb on - strand, within Rru_A0475at 557.967 kb on - strand, within Rru_A0475at 557.967 kb on - strand, within Rru_A0475at 557.967 kb on - strand, within Rru_A0475at 558.048 kb on + strand, within Rru_A0475at 558.048 kb on + strand, within Rru_A0475at 558.048 kb on + strand, within Rru_A0475at 558.049 kb on - strand, within Rru_A0475at 558.056 kb on + strand, within Rru_A0475at 558.057 kb on - strand, within Rru_A0475at 558.057 kb on - strand, within Rru_A0475at 558.245 kb on + strand, within Rru_A0475at 558.297 kb on - strand, within Rru_A0475at 558.676 kb on + strand, within Rru_A0475at 558.676 kb on + strand, within Rru_A0475at 558.677 kb on - strand, within Rru_A0475at 558.704 kb on + strand, within Rru_A0475at 558.705 kb on - strand, within Rru_A0475at 558.708 kb on - strand, within Rru_A0475

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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556,847 - Rru_A0474 0.13 +0.2
556,847 - Rru_A0474 0.13 +1.3
556,847 - Rru_A0474 0.13 -0.0
556,902 - Rru_A0474 0.19 +1.1
556,976 - Rru_A0474 0.26 -0.0
556,976 - Rru_A0474 0.26 +1.2
556,978 - Rru_A0474 0.26 -0.0
556,978 - Rru_A0474 0.26 +1.0
556,978 - Rru_A0474 0.26 -0.6
556,978 - Rru_A0474 0.26 -0.0
556,978 - Rru_A0474 0.26 -0.0
557,070 + Rru_A0474 0.35 +0.9
557,070 + Rru_A0474 0.35 -0.0
557,071 - Rru_A0474 0.35 -0.0
557,169 + Rru_A0474 0.45 -0.0
557,170 - Rru_A0474 0.45 -0.0
557,170 - Rru_A0474 0.45 +0.0
557,322 + Rru_A0474 0.60 +1.2
557,322 + Rru_A0474 0.60 +0.5
557,322 + Rru_A0474 0.60 +0.6
557,322 + Rru_A0474 0.60 +1.3
557,322 + Rru_A0474 0.60 +0.4
557,323 - Rru_A0474 0.60 +0.9
557,323 - Rru_A0474 0.60 +0.8
557,323 - Rru_A0474 0.60 +1.1
557,422 - Rru_A0474 0.69 +0.1
557,422 - Rru_A0474 0.69 -1.0
557,438 - Rru_A0474 0.71 -0.0
557,439 + Rru_A0474 0.71 +0.5
557,439 + Rru_A0474 0.71 +0.9
557,440 - Rru_A0474 0.71 -0.0
557,544 + Rru_A0474 0.81 +0.4
557,575 + Rru_A0474 0.84 +0.8
557,575 + Rru_A0474 0.84 -0.0
557,575 + Rru_A0474 0.84 +1.1
557,575 + Rru_A0474 0.84 +2.0
557,576 - Rru_A0474 0.84 -0.0
557,576 - Rru_A0474 0.84 +0.7
557,577 + Rru_A0474 0.85 -0.0
557,577 + Rru_A0474 0.85 +0.6
557,577 + Rru_A0474 0.85 -0.0
557,577 + Rru_A0474 0.85 +1.1
557,577 + Rru_A0474 0.85 +1.2
557,578 - Rru_A0474 0.85 -0.0
557,578 - Rru_A0474 0.85 +1.6
557,578 - Rru_A0474 0.85 +0.7
557,578 - Rru_A0474 0.85 +1.3
557,578 - Rru_A0474 0.85 +0.4
557,747 + -0.0
557,747 + +0.2
557,783 + -0.1
557,783 + -0.0
557,783 + +0.5
557,783 + +1.0
557,783 + -0.3
557,783 + -0.0
557,783 + +0.8
557,783 + +0.9
557,784 - -0.0
557,784 - -1.0
557,784 - +0.6
557,784 - +0.7
557,784 - +0.5
557,804 + +0.4
557,804 + +0.7
557,805 - -1.6
557,826 + +0.7
557,880 - Rru_A0475 0.12 -1.0
557,880 - Rru_A0475 0.12 +0.9
557,880 - Rru_A0475 0.12 +0.4
557,964 + Rru_A0475 0.20 +0.8
557,965 - Rru_A0475 0.20 -0.0
557,966 + Rru_A0475 0.20 +0.9
557,966 + Rru_A0475 0.20 -1.6
557,966 + Rru_A0475 0.20 +0.2
557,966 + Rru_A0475 0.20 -0.0
557,966 + Rru_A0475 0.20 -0.0
557,966 + Rru_A0475 0.20 +0.1
557,966 + Rru_A0475 0.20 -1.0
557,966 + Rru_A0475 0.20 +1.1
557,966 + Rru_A0475 0.20 -0.0
557,966 + Rru_A0475 0.20 -0.0
557,966 + Rru_A0475 0.20 +1.1
557,966 + Rru_A0475 0.20 -0.0
557,966 + Rru_A0475 0.20 -0.1
557,967 - Rru_A0475 0.20 +0.2
557,967 - Rru_A0475 0.20 +0.1
557,967 - Rru_A0475 0.20 +0.8
557,967 - Rru_A0475 0.20 +0.8
557,967 - Rru_A0475 0.20 +0.3
557,967 - Rru_A0475 0.20 +0.3
557,967 - Rru_A0475 0.20 -0.0
557,967 - Rru_A0475 0.20 -0.0
557,967 - Rru_A0475 0.20 -0.0
557,967 - Rru_A0475 0.20 +1.0
557,967 - Rru_A0475 0.20 -0.0
558,048 + Rru_A0475 0.28 -0.1
558,048 + Rru_A0475 0.28 +0.1
558,048 + Rru_A0475 0.28 +0.5
558,049 - Rru_A0475 0.28 +0.6
558,056 + Rru_A0475 0.28 +0.7
558,057 - Rru_A0475 0.28 +0.1
558,057 - Rru_A0475 0.28 -0.3
558,245 + Rru_A0475 0.45 +0.7
558,297 - Rru_A0475 0.50 +0.1
558,676 + Rru_A0475 0.85 +0.7
558,676 + Rru_A0475 0.85 +1.1
558,677 - Rru_A0475 0.85 +0.3
558,704 + Rru_A0475 0.87 +0.9
558,705 - Rru_A0475 0.87 -0.0
558,708 - Rru_A0475 0.88 -0.0

Or see this region's nucleotide sequence