Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0464

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0463 and Rru_A0464 are separated by 57 nucleotidesRru_A0464 and Rru_A0465 are separated by 42 nucleotides Rru_A0463: Rru_A0463 - Alanine racemase-like (NCBI), at 543,399 to 544,469 _A0463 Rru_A0464: Rru_A0464 - hypothetical protein (NCBI), at 544,527 to 545,348 _A0464 Rru_A0465: Rru_A0465 - Phosphoserine phosphatase SerB (NCBI), at 545,391 to 546,290 _A0465 Position (kb) 544 545 546Strain fitness (log2 ratio) -2 -1 0 1 2at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.662 kb on + strand, within Rru_A0463at 543.663 kb on - strand, within Rru_A0463at 543.663 kb on - strand, within Rru_A0463at 543.918 kb on + strand, within Rru_A0463at 543.918 kb on + strand, within Rru_A0463at 543.919 kb on - strand, within Rru_A0463at 543.919 kb on - strand, within Rru_A0463at 544.083 kb on + strand, within Rru_A0463at 544.083 kb on + strand, within Rru_A0463at 544.083 kb on + strand, within Rru_A0463at 544.084 kb on - strand, within Rru_A0463at 544.084 kb on - strand, within Rru_A0463at 544.084 kb on - strand, within Rru_A0463at 544.084 kb on - strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.091 kb on + strand, within Rru_A0463at 544.091 kb on + strand, within Rru_A0463at 544.402 kb on + strandat 544.402 kb on + strandat 544.402 kb on + strandat 544.402 kb on + strandat 544.402 kb on + strandat 544.403 kb on - strandat 544.403 kb on - strandat 544.403 kb on - strandat 544.403 kb on - strandat 544.403 kb on - strandat 544.512 kb on - strandat 544.746 kb on - strand, within Rru_A0464at 544.746 kb on - strand, within Rru_A0464at 544.793 kb on + strand, within Rru_A0464at 544.793 kb on + strand, within Rru_A0464at 544.794 kb on - strand, within Rru_A0464at 544.794 kb on - strand, within Rru_A0464at 544.794 kb on - strand, within Rru_A0464at 545.058 kb on + strand, within Rru_A0464at 545.058 kb on + strand, within Rru_A0464at 545.058 kb on + strand, within Rru_A0464at 545.058 kb on + strand, within Rru_A0464at 545.059 kb on - strand, within Rru_A0464at 545.059 kb on - strand, within Rru_A0464at 545.059 kb on - strand, within Rru_A0464at 545.059 kb on - strand, within Rru_A0464at 545.059 kb on - strand, within Rru_A0464at 545.059 kb on - strand, within Rru_A0464at 545.157 kb on + strand, within Rru_A0464at 545.157 kb on + strand, within Rru_A0464at 545.334 kb on + strandat 545.334 kb on + strandat 545.334 kb on + strandat 545.334 kb on + strandat 545.334 kb on + strandat 545.335 kb on - strandat 545.335 kb on - strandat 545.335 kb on - strandat 545.335 kb on - strandat 545.335 kb on - strandat 545.392 kb on + strandat 545.392 kb on + strandat 545.393 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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543,660 + Rru_A0463 0.24 +0.9
543,660 + Rru_A0463 0.24 +1.2
543,660 + Rru_A0463 0.24 -0.9
543,660 + Rru_A0463 0.24 -0.0
543,660 + Rru_A0463 0.24 +1.2
543,660 + Rru_A0463 0.24 -0.0
543,660 + Rru_A0463 0.24 -0.3
543,660 + Rru_A0463 0.24 -0.0
543,661 - Rru_A0463 0.24 +0.5
543,661 - Rru_A0463 0.24 -0.0
543,661 - Rru_A0463 0.24 +0.5
543,661 - Rru_A0463 0.24 -0.0
543,661 - Rru_A0463 0.24 -2.6
543,661 - Rru_A0463 0.24 -0.0
543,661 - Rru_A0463 0.24 +0.8
543,661 - Rru_A0463 0.24 -0.0
543,661 - Rru_A0463 0.24 +0.5
543,661 - Rru_A0463 0.24 +0.1
543,661 - Rru_A0463 0.24 +0.1
543,662 + Rru_A0463 0.25 -0.0
543,663 - Rru_A0463 0.25 -1.0
543,663 - Rru_A0463 0.25 -0.0
543,918 + Rru_A0463 0.48 -0.0
543,918 + Rru_A0463 0.48 +0.6
543,919 - Rru_A0463 0.49 -0.0
543,919 - Rru_A0463 0.49 +0.7
544,083 + Rru_A0463 0.64 -1.0
544,083 + Rru_A0463 0.64 -0.0
544,083 + Rru_A0463 0.64 +0.2
544,084 - Rru_A0463 0.64 -0.1
544,084 - Rru_A0463 0.64 -0.0
544,084 - Rru_A0463 0.64 -0.0
544,084 - Rru_A0463 0.64 -0.0
544,089 + Rru_A0463 0.64 +0.3
544,089 + Rru_A0463 0.64 -0.0
544,089 + Rru_A0463 0.64 +0.5
544,089 + Rru_A0463 0.64 +0.7
544,089 + Rru_A0463 0.64 +0.4
544,089 + Rru_A0463 0.64 -0.0
544,090 - Rru_A0463 0.65 +0.1
544,090 - Rru_A0463 0.65 -0.3
544,090 - Rru_A0463 0.65 -0.0
544,090 - Rru_A0463 0.65 -0.0
544,090 - Rru_A0463 0.65 -0.0
544,090 - Rru_A0463 0.65 -0.0
544,090 - Rru_A0463 0.65 +0.4
544,091 + Rru_A0463 0.65 -0.0
544,091 + Rru_A0463 0.65 +0.6
544,402 + +0.5
544,402 + +0.9
544,402 + +0.3
544,402 + -0.0
544,402 + +0.3
544,403 - +0.1
544,403 - -0.4
544,403 - -0.4
544,403 - +0.5
544,403 - +0.2
544,512 - -0.0
544,746 - Rru_A0464 0.27 -0.0
544,746 - Rru_A0464 0.27 -0.0
544,793 + Rru_A0464 0.32 +1.3
544,793 + Rru_A0464 0.32 -0.7
544,794 - Rru_A0464 0.32 -0.0
544,794 - Rru_A0464 0.32 +0.7
544,794 - Rru_A0464 0.32 +1.3
545,058 + Rru_A0464 0.65 +0.4
545,058 + Rru_A0464 0.65 -0.0
545,058 + Rru_A0464 0.65 +0.3
545,058 + Rru_A0464 0.65 +1.3
545,059 - Rru_A0464 0.65 -1.0
545,059 - Rru_A0464 0.65 +0.5
545,059 - Rru_A0464 0.65 +0.8
545,059 - Rru_A0464 0.65 -0.0
545,059 - Rru_A0464 0.65 +2.0
545,059 - Rru_A0464 0.65 -0.0
545,157 + Rru_A0464 0.77 +0.2
545,157 + Rru_A0464 0.77 -0.0
545,334 + +0.1
545,334 + +0.2
545,334 + +0.1
545,334 + -0.0
545,334 + +0.6
545,335 - -0.0
545,335 - +1.1
545,335 - -1.0
545,335 - +0.3
545,335 - -0.6
545,392 + +1.1
545,392 + -0.0
545,393 - +0.7

Or see this region's nucleotide sequence