Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0441 and Rru_A0442 are separated by 22 nucleotides Rru_A0442 and Rru_A0443 are separated by 93 nucleotides Rru_A0443 and Rru_A0444 are separated by 205 nucleotides
Rru_A0441: Rru_A0441 - chemotaxis sensory transducer (NCBI), at 518,604 to 520,565
_A0441
Rru_A0442: Rru_A0442 - FAD linked oxidase-like (NCBI), at 520,588 to 522,024
_A0442
Rru_A0443: Rru_A0443 - hypothetical protein (NCBI), at 522,118 to 522,768
_A0443
Rru_A0444: Rru_A0444 - Sua5/YciO/YrdC/YwlC (NCBI), at 522,974 to 523,942
_A0444
Position (kb) 520
521
522
523 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 520.564 kb on - strand at 520.564 kb on - strand at 522.068 kb on - strand at 522.082 kb on + strand at 522.082 kb on + strand at 522.082 kb on + strand at 522.083 kb on - strand at 522.083 kb on - strand at 522.083 kb on - strand at 522.083 kb on - strand at 522.083 kb on - strand at 522.181 kb on + strand at 522.223 kb on + strand, within Rru_A0443 at 522.410 kb on + strand, within Rru_A0443 at 522.418 kb on - strand, within Rru_A0443 at 522.546 kb on - strand, within Rru_A0443 at 522.562 kb on - strand, within Rru_A0443 at 522.563 kb on + strand, within Rru_A0443 at 522.563 kb on + strand, within Rru_A0443 at 522.563 kb on + strand, within Rru_A0443 at 522.564 kb on - strand, within Rru_A0443 at 522.564 kb on - strand, within Rru_A0443 at 522.564 kb on - strand, within Rru_A0443 at 522.564 kb on - strand, within Rru_A0443 at 522.564 kb on - strand, within Rru_A0443 at 522.564 kb on - strand, within Rru_A0443 at 522.617 kb on + strand, within Rru_A0443 at 522.617 kb on + strand, within Rru_A0443 at 522.617 kb on + strand, within Rru_A0443 at 522.618 kb on - strand, within Rru_A0443 at 522.618 kb on - strand, within Rru_A0443 at 522.618 kb on - strand, within Rru_A0443 at 522.618 kb on - strand, within Rru_A0443 at 522.618 kb on - strand, within Rru_A0443 at 522.803 kb on + strand at 522.803 kb on + strand at 522.803 kb on + strand at 522.804 kb on - strand at 522.804 kb on - strand at 522.889 kb on + strand at 522.889 kb on + strand at 522.970 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 520,564 - -0.0 520,564 - -0.1 522,068 - -0.0 522,082 + -0.7 522,082 + +0.6 522,082 + +1.2 522,083 - +0.5 522,083 - -0.0 522,083 - +0.2 522,083 - -0.0 522,083 - +0.6 522,181 + +0.2 522,223 + Rru_A0443 0.16 -1.0 522,410 + Rru_A0443 0.45 -0.5 522,418 - Rru_A0443 0.46 -0.1 522,546 - Rru_A0443 0.66 -0.7 522,562 - Rru_A0443 0.68 -1.6 522,563 + Rru_A0443 0.68 -0.0 522,563 + Rru_A0443 0.68 -0.1 522,563 + Rru_A0443 0.68 -0.0 522,564 - Rru_A0443 0.69 -0.7 522,564 - Rru_A0443 0.69 +0.4 522,564 - Rru_A0443 0.69 +2.8 522,564 - Rru_A0443 0.69 +1.2 522,564 - Rru_A0443 0.69 -0.3 522,564 - Rru_A0443 0.69 +0.1 522,617 + Rru_A0443 0.77 +0.3 522,617 + Rru_A0443 0.77 +0.7 522,617 + Rru_A0443 0.77 -0.2 522,618 - Rru_A0443 0.77 -0.0 522,618 - Rru_A0443 0.77 -2.6 522,618 - Rru_A0443 0.77 -0.0 522,618 - Rru_A0443 0.77 +0.6 522,618 - Rru_A0443 0.77 -0.0 522,803 + -0.0 522,803 + -0.0 522,803 + +0.2 522,804 - -0.2 522,804 - -0.0 522,889 + +0.1 522,889 + -0.0 522,970 - +1.1
Or see this region's nucleotide sequence