Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0440 and Rru_A0441 are separated by 170 nucleotides Rru_A0441 and Rru_A0442 are separated by 22 nucleotides
Rru_A0440: Rru_A0440 - Xylose isomerase-like TIM barrel (NCBI), at 517,462 to 518,433
_A0440
Rru_A0441: Rru_A0441 - chemotaxis sensory transducer (NCBI), at 518,604 to 520,565
_A0441
Rru_A0442: Rru_A0442 - FAD linked oxidase-like (NCBI), at 520,588 to 522,024
_A0442
Position (kb) 518
519
520
521 Strain fitness (log2 ratio) -1
0
1 at 517.929 kb on + strand, within Rru_A0440 at 517.929 kb on + strand, within Rru_A0440 at 518.055 kb on + strand, within Rru_A0440 at 518.056 kb on - strand, within Rru_A0440 at 518.056 kb on - strand, within Rru_A0440 at 518.383 kb on - strand at 518.477 kb on + strand at 518.477 kb on + strand at 518.477 kb on + strand at 518.477 kb on + strand at 518.539 kb on - strand at 518.563 kb on + strand at 518.563 kb on + strand at 518.563 kb on + strand at 518.564 kb on - strand at 519.084 kb on + strand, within Rru_A0441 at 519.084 kb on + strand, within Rru_A0441 at 519.270 kb on + strand, within Rru_A0441 at 519.270 kb on + strand, within Rru_A0441 at 519.270 kb on + strand, within Rru_A0441 at 519.271 kb on - strand, within Rru_A0441 at 519.271 kb on - strand, within Rru_A0441 at 519.271 kb on - strand, within Rru_A0441 at 519.271 kb on - strand, within Rru_A0441 at 519.271 kb on - strand, within Rru_A0441 at 519.345 kb on + strand, within Rru_A0441 at 519.345 kb on + strand, within Rru_A0441 at 519.346 kb on - strand, within Rru_A0441 at 520.564 kb on - strand at 520.564 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 517,929 + Rru_A0440 0.48 -0.0 517,929 + Rru_A0440 0.48 +1.0 518,055 + Rru_A0440 0.61 +1.1 518,056 - Rru_A0440 0.61 -0.0 518,056 - Rru_A0440 0.61 +1.5 518,383 - +0.7 518,477 + -0.0 518,477 + +0.3 518,477 + -0.0 518,477 + -0.0 518,539 - -0.6 518,563 + +0.1 518,563 + +0.3 518,563 + +1.5 518,564 - -0.0 519,084 + Rru_A0441 0.24 +0.8 519,084 + Rru_A0441 0.24 +0.6 519,270 + Rru_A0441 0.34 +0.9 519,270 + Rru_A0441 0.34 +0.3 519,270 + Rru_A0441 0.34 +0.9 519,271 - Rru_A0441 0.34 -0.0 519,271 - Rru_A0441 0.34 +0.1 519,271 - Rru_A0441 0.34 -0.0 519,271 - Rru_A0441 0.34 -0.0 519,271 - Rru_A0441 0.34 -0.0 519,345 + Rru_A0441 0.38 +0.8 519,345 + Rru_A0441 0.38 +1.4 519,346 - Rru_A0441 0.38 -0.0 520,564 - -0.0 520,564 - -0.1
Or see this region's nucleotide sequence