Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0438 and Rru_A0439 are separated by 212 nucleotides Rru_A0439 and Rru_A0440 are separated by 16 nucleotides
Rru_A0438: Rru_A0438 - Multi-sensor Signal Transduction Histidine Kinase (NCBI), at 513,394 to 516,138
_A0438
Rru_A0439: Rru_A0439 - extracellular solute-binding protein, family 3 (NCBI), at 516,351 to 517,445
_A0439
Rru_A0440: Rru_A0440 - Xylose isomerase-like TIM barrel (NCBI), at 517,462 to 518,433
_A0440
Position (kb) 516
517
518 Strain fitness (log2 ratio) -2
-1
0
1 at 515.853 kb on + strand, within Rru_A0438 at 515.854 kb on - strand, within Rru_A0438 at 516.214 kb on + strand at 516.214 kb on + strand at 516.214 kb on + strand at 516.214 kb on + strand at 516.215 kb on - strand at 516.215 kb on - strand at 516.306 kb on - strand at 516.306 kb on - strand at 516.306 kb on - strand at 516.497 kb on + strand, within Rru_A0439 at 516.497 kb on + strand, within Rru_A0439 at 516.498 kb on - strand, within Rru_A0439 at 516.519 kb on + strand, within Rru_A0439 at 516.933 kb on - strand, within Rru_A0439 at 516.933 kb on - strand, within Rru_A0439 at 516.935 kb on - strand, within Rru_A0439 at 517.000 kb on - strand, within Rru_A0439 at 517.000 kb on - strand, within Rru_A0439 at 517.000 kb on - strand, within Rru_A0439 at 517.000 kb on - strand, within Rru_A0439 at 517.189 kb on + strand, within Rru_A0439 at 517.332 kb on + strand, within Rru_A0439 at 517.333 kb on - strand, within Rru_A0439 at 517.443 kb on + strand at 517.444 kb on - strand at 517.463 kb on + strand at 517.463 kb on + strand at 517.463 kb on + strand at 517.464 kb on - strand at 517.464 kb on - strand at 517.464 kb on - strand at 517.464 kb on - strand at 517.493 kb on + strand at 517.493 kb on + strand at 517.929 kb on + strand, within Rru_A0440 at 517.929 kb on + strand, within Rru_A0440 at 518.055 kb on + strand, within Rru_A0440 at 518.056 kb on - strand, within Rru_A0440 at 518.056 kb on - strand, within Rru_A0440 at 518.383 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 515,853 + Rru_A0438 0.90 +0.7 515,854 - Rru_A0438 0.90 -0.0 516,214 + -0.0 516,214 + +0.8 516,214 + +1.5 516,214 + -0.0 516,215 - -1.6 516,215 - -0.0 516,306 - -0.0 516,306 - -0.0 516,306 - -0.0 516,497 + Rru_A0439 0.13 +0.2 516,497 + Rru_A0439 0.13 -0.0 516,498 - Rru_A0439 0.13 -0.0 516,519 + Rru_A0439 0.15 +0.8 516,933 - Rru_A0439 0.53 -0.1 516,933 - Rru_A0439 0.53 +0.9 516,935 - Rru_A0439 0.53 +0.5 517,000 - Rru_A0439 0.59 +0.9 517,000 - Rru_A0439 0.59 +0.8 517,000 - Rru_A0439 0.59 -0.8 517,000 - Rru_A0439 0.59 +1.5 517,189 + Rru_A0439 0.77 +0.6 517,332 + Rru_A0439 0.90 +1.0 517,333 - Rru_A0439 0.90 +0.4 517,443 + +1.0 517,444 - -0.0 517,463 + +0.4 517,463 + -0.0 517,463 + -0.0 517,464 - -0.0 517,464 - +0.8 517,464 - -0.0 517,464 - -0.0 517,493 + -2.5 517,493 + -0.1 517,929 + Rru_A0440 0.48 -0.0 517,929 + Rru_A0440 0.48 +1.0 518,055 + Rru_A0440 0.61 +1.1 518,056 - Rru_A0440 0.61 -0.0 518,056 - Rru_A0440 0.61 +1.5 518,383 - +0.7
Or see this region's nucleotide sequence