Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0432

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0430 and Rru_A0431 overlap by 4 nucleotidesRru_A0431 and Rru_A0432 overlap by 4 nucleotidesRru_A0432 and Rru_A0433 overlap by 4 nucleotides Rru_A0430: Rru_A0430 - Ribonuclease BN (NCBI), at 502,245 to 503,186 _A0430 Rru_A0431: Rru_A0431 - 16S rRNA dimethylase (NCBI), at 503,183 to 504,049 _A0431 Rru_A0432: Rru_A0432 - 4-hydroxythreonine-4-phosphate dehydrogenase (NCBI), at 504,046 to 505,080 _A0432 Rru_A0433: Rru_A0433 - PpiC-type peptidyl-prolyl cis-trans isomerase (NCBI), at 505,077 to 506,411 _A0433 Position (kb) 504 505 506Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 503.079 kb on + strand, within Rru_A0430at 504.249 kb on - strand, within Rru_A0432at 504.249 kb on - strand, within Rru_A0432at 504.249 kb on - strand, within Rru_A0432at 505.081 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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503,079 + Rru_A0430 0.89 -0.0
504,249 - Rru_A0432 0.20 -2.8
504,249 - Rru_A0432 0.20 -2.3
504,249 - Rru_A0432 0.20 -2.4
505,081 - +2.3

Or see this region's nucleotide sequence