Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0423 and Rru_A0424 are separated by 28 nucleotides Rru_A0424 and Rru_A0425 are separated by 100 nucleotides Rru_A0425 and Rru_A0426 are separated by 148 nucleotides Rru_A0426 and Rru_A0427 are separated by 273 nucleotides
Rru_A0423: Rru_A0423 - hypothetical protein (NCBI), at 497,720 to 498,124
_A0423
Rru_A0424: Rru_A0424 - hypothetical protein (NCBI), at 498,153 to 498,377
_A0424
Rru_A0425: Rru_A0425 - hypothetical protein (NCBI), at 498,478 to 498,828
_A0425
Rru_A0426: Rru_A0426 - hypothetical protein (NCBI), at 498,977 to 499,318
_A0426
Rru_A0427: Rru_A0427 - Short-chain dehydrogenase/reductase SDR (NCBI), at 499,592 to 500,362
_A0427
Position (kb) 498
499
500 Strain fitness (log2 ratio) -1
0
1
2 at 498.093 kb on + strand at 498.093 kb on + strand at 498.093 kb on + strand at 498.093 kb on + strand at 498.094 kb on - strand at 498.094 kb on - strand at 498.161 kb on - strand at 498.197 kb on - strand, within Rru_A0424 at 498.331 kb on - strand, within Rru_A0424 at 498.381 kb on + strand at 498.381 kb on + strand at 498.381 kb on + strand at 498.381 kb on + strand at 498.382 kb on - strand at 498.382 kb on - strand at 498.386 kb on + strand at 498.387 kb on - strand at 498.479 kb on + strand at 498.479 kb on + strand at 498.480 kb on - strand at 498.480 kb on - strand at 498.480 kb on - strand at 498.846 kb on - strand at 498.851 kb on + strand at 498.851 kb on + strand at 498.852 kb on - strand at 498.852 kb on - strand at 498.852 kb on - strand at 498.852 kb on - strand at 498.914 kb on + strand at 498.978 kb on + strand at 498.979 kb on - strand at 498.979 kb on - strand at 499.063 kb on + strand, within Rru_A0426 at 499.063 kb on + strand, within Rru_A0426 at 499.063 kb on + strand, within Rru_A0426 at 499.064 kb on - strand, within Rru_A0426 at 499.064 kb on - strand, within Rru_A0426 at 499.064 kb on - strand, within Rru_A0426 at 499.065 kb on + strand, within Rru_A0426 at 499.065 kb on + strand, within Rru_A0426 at 499.065 kb on + strand, within Rru_A0426 at 499.065 kb on + strand, within Rru_A0426 at 499.066 kb on - strand, within Rru_A0426 at 499.066 kb on - strand, within Rru_A0426 at 499.066 kb on - strand, within Rru_A0426 at 499.066 kb on - strand, within Rru_A0426 at 499.340 kb on + strand at 499.340 kb on + strand at 499.386 kb on + strand at 499.439 kb on + strand at 499.439 kb on + strand at 499.439 kb on + strand at 499.440 kb on - strand at 499.440 kb on - strand at 499.908 kb on + strand, within Rru_A0427 at 499.908 kb on + strand, within Rru_A0427 at 499.908 kb on + strand, within Rru_A0427 at 499.909 kb on - strand, within Rru_A0427 at 499.909 kb on - strand, within Rru_A0427 at 499.909 kb on - strand, within Rru_A0427 at 499.909 kb on - strand, within Rru_A0427 at 499.909 kb on - strand, within Rru_A0427 at 500.292 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 498,093 + -0.0 498,093 + -0.0 498,093 + +0.1 498,093 + -0.0 498,094 - -1.0 498,094 - +0.7 498,161 - -1.0 498,197 - Rru_A0424 0.20 -0.0 498,331 - Rru_A0424 0.79 +0.7 498,381 + +0.8 498,381 + -0.0 498,381 + -1.6 498,381 + -0.0 498,382 - -0.0 498,382 - +0.8 498,386 + -0.0 498,387 - +0.0 498,479 + +0.2 498,479 + +0.6 498,480 - -0.0 498,480 - +0.6 498,480 - +0.5 498,846 - +0.1 498,851 + +0.7 498,851 + +0.7 498,852 - -0.0 498,852 - +0.8 498,852 - -0.0 498,852 - +0.5 498,914 + -0.1 498,978 + -0.0 498,979 - -0.0 498,979 - +0.9 499,063 + Rru_A0426 0.25 +1.4 499,063 + Rru_A0426 0.25 +1.5 499,063 + Rru_A0426 0.25 +0.2 499,064 - Rru_A0426 0.25 +0.4 499,064 - Rru_A0426 0.25 +0.6 499,064 - Rru_A0426 0.25 -0.0 499,065 + Rru_A0426 0.26 -0.0 499,065 + Rru_A0426 0.26 +0.8 499,065 + Rru_A0426 0.26 -1.0 499,065 + Rru_A0426 0.26 -0.2 499,066 - Rru_A0426 0.26 -0.0 499,066 - Rru_A0426 0.26 -0.0 499,066 - Rru_A0426 0.26 -1.0 499,066 - Rru_A0426 0.26 +2.2 499,340 + -1.0 499,340 + +0.6 499,386 + -0.0 499,439 + -0.0 499,439 + +0.2 499,439 + -1.0 499,440 - -0.0 499,440 - -0.2 499,908 + Rru_A0427 0.41 +1.2 499,908 + Rru_A0427 0.41 +0.3 499,908 + Rru_A0427 0.41 +1.3 499,909 - Rru_A0427 0.41 -0.0 499,909 - Rru_A0427 0.41 +1.1 499,909 - Rru_A0427 0.41 +0.7 499,909 - Rru_A0427 0.41 -0.0 499,909 - Rru_A0427 0.41 +0.7 500,292 + +0.7
Or see this region's nucleotide sequence