Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0419 and Rru_A0420 are separated by 18 nucleotides Rru_A0420 and Rru_A0421 are separated by 155 nucleotides Rru_A0421 and Rru_A0422 are separated by 95 nucleotides Rru_A0422 and Rru_A0423 are separated by 162 nucleotides
Rru_A0419: Rru_A0419 - Aminodeoxychorismate lyase (NCBI), at 495,193 to 496,179
_A0419
Rru_A0420: Rru_A0420 - hypothetical protein (NCBI), at 496,198 to 496,593
_A0420
Rru_A0421: Rru_A0421 - hypothetical protein (NCBI), at 496,749 to 497,075
_A0421
Rru_A0422: Rru_A0422 - hypothetical protein (NCBI), at 497,171 to 497,557
_A0422
Rru_A0423: Rru_A0423 - hypothetical protein (NCBI), at 497,720 to 498,124
_A0423
Position (kb) 496
497
498 Strain fitness (log2 ratio) -2
-1
0
1 at 495.892 kb on + strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.892 kb on + strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.893 kb on - strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.973 kb on + strand, within Rru_A0419 at 495.974 kb on - strand, within Rru_A0419 at 495.974 kb on - strand, within Rru_A0419 at 495.974 kb on - strand, within Rru_A0419 at 495.974 kb on - strand, within Rru_A0419 at 495.974 kb on - strand, within Rru_A0419 at 496.066 kb on + strand, within Rru_A0419 at 496.066 kb on + strand, within Rru_A0419 at 496.066 kb on + strand, within Rru_A0419 at 496.066 kb on + strand, within Rru_A0419 at 496.067 kb on - strand, within Rru_A0419 at 496.067 kb on - strand, within Rru_A0419 at 496.067 kb on - strand, within Rru_A0419 at 496.199 kb on + strand at 496.200 kb on - strand at 496.456 kb on - strand, within Rru_A0420 at 496.657 kb on - strand at 496.750 kb on + strand at 496.979 kb on + strand, within Rru_A0421 at 497.008 kb on + strand, within Rru_A0421 at 497.009 kb on - strand, within Rru_A0421 at 497.009 kb on - strand, within Rru_A0421 at 497.112 kb on - strand at 497.361 kb on + strand, within Rru_A0422 at 497.361 kb on + strand, within Rru_A0422 at 497.362 kb on - strand, within Rru_A0422 at 497.362 kb on - strand, within Rru_A0422 at 497.603 kb on + strand at 497.665 kb on + strand at 497.666 kb on - strand at 497.671 kb on + strand at 497.736 kb on + strand at 497.742 kb on + strand at 497.743 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 495,892 + Rru_A0419 0.71 -0.0 495,892 + Rru_A0419 0.71 +0.6 495,892 + Rru_A0419 0.71 -1.0 495,892 + Rru_A0419 0.71 -0.0 495,892 + Rru_A0419 0.71 -0.0 495,892 + Rru_A0419 0.71 +0.4 495,893 - Rru_A0419 0.71 -0.0 495,893 - Rru_A0419 0.71 +0.1 495,893 - Rru_A0419 0.71 +0.1 495,893 - Rru_A0419 0.71 +1.3 495,893 - Rru_A0419 0.71 -0.0 495,893 - Rru_A0419 0.71 -0.0 495,973 + Rru_A0419 0.79 -0.0 495,973 + Rru_A0419 0.79 -0.0 495,973 + Rru_A0419 0.79 -0.0 495,973 + Rru_A0419 0.79 -0.0 495,973 + Rru_A0419 0.79 +0.4 495,973 + Rru_A0419 0.79 +0.4 495,973 + Rru_A0419 0.79 -0.2 495,973 + Rru_A0419 0.79 -1.3 495,974 - Rru_A0419 0.79 -0.1 495,974 - Rru_A0419 0.79 +1.0 495,974 - Rru_A0419 0.79 -0.0 495,974 - Rru_A0419 0.79 +0.3 495,974 - Rru_A0419 0.79 +0.2 496,066 + Rru_A0419 0.88 -0.0 496,066 + Rru_A0419 0.88 +1.5 496,066 + Rru_A0419 0.88 +0.3 496,066 + Rru_A0419 0.88 +0.4 496,067 - Rru_A0419 0.89 -0.5 496,067 - Rru_A0419 0.89 -0.0 496,067 - Rru_A0419 0.89 +0.7 496,199 + +0.7 496,200 - -0.0 496,456 - Rru_A0420 0.65 +0.3 496,657 - +1.0 496,750 + -1.0 496,979 + Rru_A0421 0.70 +0.4 497,008 + Rru_A0421 0.79 -0.6 497,009 - Rru_A0421 0.80 +1.2 497,009 - Rru_A0421 0.80 +0.8 497,112 - -2.6 497,361 + Rru_A0422 0.49 +0.4 497,361 + Rru_A0422 0.49 +0.7 497,362 - Rru_A0422 0.49 +0.3 497,362 - Rru_A0422 0.49 -0.0 497,603 + -0.0 497,665 + -0.2 497,666 - +0.9 497,671 + -0.0 497,736 + -0.0 497,742 + +0.5 497,743 - -0.0
Or see this region's nucleotide sequence