Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0400 and Rru_A0401 are separated by 126 nucleotides Rru_A0401 and Rru_A0402 are separated by 4 nucleotides Rru_A0402 and Rru_A0403 are separated by 33 nucleotides
Rru_A0400: Rru_A0400 - hypothetical protein (NCBI), at 476,995 to 478,437
_A0400
Rru_A0401: Rru_A0401 - hypothetical protein (NCBI), at 478,564 to 479,253
_A0401
Rru_A0402: Rru_A0402 - hypothetical protein (NCBI), at 479,258 to 479,857
_A0402
Rru_A0403: Rru_A0403 - Short-chain dehydrogenase/reductase SDR (NCBI), at 479,891 to 480,604
_A0403
Position (kb) 478
479
480 Strain fitness (log2 ratio) -1
0
1 at 478.000 kb on + strand, within Rru_A0400 at 478.174 kb on + strand, within Rru_A0400 at 478.175 kb on - strand, within Rru_A0400 at 478.375 kb on + strand at 478.375 kb on + strand at 478.375 kb on + strand at 478.375 kb on + strand at 478.375 kb on + strand at 478.375 kb on + strand at 478.375 kb on + strand at 478.376 kb on - strand at 478.376 kb on - strand at 478.376 kb on - strand at 478.376 kb on - strand at 478.376 kb on - strand at 478.684 kb on - strand, within Rru_A0401 at 478.897 kb on - strand, within Rru_A0401 at 478.897 kb on - strand, within Rru_A0401 at 479.351 kb on + strand, within Rru_A0402 at 479.432 kb on + strand, within Rru_A0402 at 479.432 kb on + strand, within Rru_A0402 at 479.432 kb on + strand, within Rru_A0402 at 479.432 kb on + strand, within Rru_A0402 at 479.432 kb on + strand, within Rru_A0402 at 479.433 kb on - strand, within Rru_A0402 at 479.433 kb on - strand, within Rru_A0402 at 479.433 kb on - strand, within Rru_A0402 at 479.433 kb on - strand, within Rru_A0402 at 479.433 kb on - strand, within Rru_A0402 at 479.435 kb on + strand, within Rru_A0402 at 479.436 kb on - strand, within Rru_A0402 at 479.436 kb on - strand, within Rru_A0402 at 479.575 kb on + strand, within Rru_A0402 at 479.575 kb on + strand, within Rru_A0402 at 479.576 kb on - strand, within Rru_A0402 at 479.679 kb on + strand, within Rru_A0402 at 479.681 kb on + strand, within Rru_A0402 at 479.682 kb on - strand, within Rru_A0402 at 479.744 kb on - strand, within Rru_A0402 at 479.745 kb on + strand, within Rru_A0402 at 479.745 kb on + strand, within Rru_A0402 at 479.745 kb on + strand, within Rru_A0402 at 479.745 kb on + strand, within Rru_A0402 at 479.746 kb on - strand, within Rru_A0402 at 479.753 kb on + strand, within Rru_A0402 at 479.753 kb on + strand, within Rru_A0402 at 479.753 kb on + strand, within Rru_A0402 at 479.753 kb on + strand, within Rru_A0402 at 479.753 kb on + strand, within Rru_A0402 at 479.754 kb on - strand, within Rru_A0402 at 479.754 kb on - strand, within Rru_A0402 at 479.892 kb on + strand at 479.893 kb on - strand at 480.133 kb on - strand, within Rru_A0403 at 480.144 kb on + strand, within Rru_A0403 at 480.241 kb on - strand, within Rru_A0403
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 478,000 + Rru_A0400 0.70 -0.0 478,174 + Rru_A0400 0.82 +0.3 478,175 - Rru_A0400 0.82 -0.0 478,375 + -0.0 478,375 + -0.0 478,375 + +0.4 478,375 + +0.9 478,375 + +1.0 478,375 + -0.0 478,375 + -0.0 478,376 - +1.4 478,376 - -0.0 478,376 - +0.8 478,376 - -0.0 478,376 - -0.0 478,684 - Rru_A0401 0.17 -0.4 478,897 - Rru_A0401 0.48 -0.2 478,897 - Rru_A0401 0.48 -0.0 479,351 + Rru_A0402 0.15 -0.1 479,432 + Rru_A0402 0.29 +0.1 479,432 + Rru_A0402 0.29 +0.6 479,432 + Rru_A0402 0.29 -0.3 479,432 + Rru_A0402 0.29 -0.0 479,432 + Rru_A0402 0.29 +1.0 479,433 - Rru_A0402 0.29 -0.0 479,433 - Rru_A0402 0.29 +0.4 479,433 - Rru_A0402 0.29 +1.1 479,433 - Rru_A0402 0.29 -0.0 479,433 - Rru_A0402 0.29 -0.4 479,435 + Rru_A0402 0.29 -0.0 479,436 - Rru_A0402 0.30 -1.0 479,436 - Rru_A0402 0.30 +0.7 479,575 + Rru_A0402 0.53 -0.0 479,575 + Rru_A0402 0.53 -0.0 479,576 - Rru_A0402 0.53 -0.3 479,679 + Rru_A0402 0.70 -0.0 479,681 + Rru_A0402 0.70 -0.0 479,682 - Rru_A0402 0.71 -0.0 479,744 - Rru_A0402 0.81 +0.4 479,745 + Rru_A0402 0.81 +0.6 479,745 + Rru_A0402 0.81 +0.1 479,745 + Rru_A0402 0.81 -0.9 479,745 + Rru_A0402 0.81 +0.2 479,746 - Rru_A0402 0.81 -1.2 479,753 + Rru_A0402 0.82 -0.0 479,753 + Rru_A0402 0.82 +0.8 479,753 + Rru_A0402 0.82 +0.1 479,753 + Rru_A0402 0.82 -1.4 479,753 + Rru_A0402 0.82 -0.8 479,754 - Rru_A0402 0.83 -0.0 479,754 - Rru_A0402 0.83 -0.0 479,892 + -0.0 479,893 - +1.0 480,133 - Rru_A0403 0.34 -1.0 480,144 + Rru_A0403 0.35 -0.0 480,241 - Rru_A0403 0.49 -1.0
Or see this region's nucleotide sequence