Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0392 and Rru_A0393 are separated by 14 nucleotides Rru_A0393 and Rru_A0394 are separated by 10 nucleotides Rru_A0394 and Rru_A0395 are separated by 240 nucleotides
Rru_A0392: Rru_A0392 - Molybdopterin binding domain (NCBI), at 468,486 to 469,253
_A0392
Rru_A0393: Rru_A0393 - NUDIX hydrolase (NCBI), at 469,268 to 469,723
_A0393
Rru_A0394: Rru_A0394 - Amino-acid N-acetyltransferase (NCBI), at 469,734 to 470,972
_A0394
Rru_A0395: Rru_A0395 - PpiC-type peptidyl-prolyl cis-trans isomerase (NCBI), at 471,213 to 472,139
_A0395
Position (kb) 469
470
471 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 468.925 kb on + strand, within Rru_A0392 at 468.925 kb on + strand, within Rru_A0392 at 468.926 kb on - strand, within Rru_A0392 at 469.048 kb on + strand, within Rru_A0392 at 469.048 kb on + strand, within Rru_A0392 at 469.048 kb on + strand, within Rru_A0392 at 469.048 kb on + strand, within Rru_A0392 at 469.269 kb on + strand at 469.270 kb on - strand at 469.324 kb on - strand, within Rru_A0393 at 469.408 kb on - strand, within Rru_A0393 at 469.437 kb on + strand, within Rru_A0393 at 469.437 kb on + strand, within Rru_A0393 at 469.437 kb on + strand, within Rru_A0393 at 469.437 kb on + strand, within Rru_A0393 at 469.437 kb on + strand, within Rru_A0393 at 469.437 kb on + strand, within Rru_A0393 at 469.438 kb on - strand, within Rru_A0393 at 469.438 kb on - strand, within Rru_A0393 at 469.438 kb on - strand, within Rru_A0393 at 469.438 kb on - strand, within Rru_A0393 at 469.438 kb on - strand, within Rru_A0393 at 469.438 kb on - strand, within Rru_A0393 at 469.765 kb on + strand at 469.765 kb on + strand at 469.765 kb on + strand at 469.766 kb on - strand at 469.853 kb on + strand at 469.853 kb on + strand at 469.854 kb on - strand at 469.879 kb on + strand, within Rru_A0394 at 470.371 kb on + strand, within Rru_A0394 at 470.371 kb on + strand, within Rru_A0394 at 470.482 kb on + strand, within Rru_A0394 at 470.483 kb on - strand, within Rru_A0394 at 470.483 kb on - strand, within Rru_A0394 at 470.875 kb on + strand at 470.891 kb on + strand at 470.891 kb on + strand at 470.891 kb on + strand at 471.027 kb on + strand at 471.027 kb on + strand at 471.028 kb on - strand at 471.350 kb on + strand, within Rru_A0395 at 471.748 kb on + strand, within Rru_A0395 at 471.800 kb on + strand, within Rru_A0395 at 471.800 kb on + strand, within Rru_A0395 at 471.800 kb on + strand, within Rru_A0395 at 471.801 kb on - strand, within Rru_A0395 at 471.801 kb on - strand, within Rru_A0395 at 471.802 kb on + strand, within Rru_A0395 at 471.802 kb on + strand, within Rru_A0395 at 471.802 kb on + strand, within Rru_A0395 at 471.802 kb on + strand, within Rru_A0395 at 471.802 kb on + strand, within Rru_A0395 at 471.803 kb on - strand, within Rru_A0395 at 471.803 kb on - strand, within Rru_A0395 at 471.803 kb on - strand, within Rru_A0395 at 471.803 kb on - strand, within Rru_A0395 at 471.934 kb on + strand, within Rru_A0395 at 471.934 kb on + strand, within Rru_A0395 at 471.934 kb on + strand, within Rru_A0395 at 471.934 kb on + strand, within Rru_A0395 at 471.935 kb on - strand, within Rru_A0395 at 471.935 kb on - strand, within Rru_A0395
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 468,925 + Rru_A0392 0.57 +0.6 468,925 + Rru_A0392 0.57 +0.0 468,926 - Rru_A0392 0.57 +0.2 469,048 + Rru_A0392 0.73 +0.6 469,048 + Rru_A0392 0.73 +0.5 469,048 + Rru_A0392 0.73 +0.7 469,048 + Rru_A0392 0.73 +0.0 469,269 + +0.1 469,270 - -0.6 469,324 - Rru_A0393 0.12 +0.0 469,408 - Rru_A0393 0.31 +0.0 469,437 + Rru_A0393 0.37 +1.4 469,437 + Rru_A0393 0.37 +0.3 469,437 + Rru_A0393 0.37 +0.5 469,437 + Rru_A0393 0.37 +1.0 469,437 + Rru_A0393 0.37 -0.1 469,437 + Rru_A0393 0.37 +0.0 469,438 - Rru_A0393 0.37 +0.0 469,438 - Rru_A0393 0.37 -1.0 469,438 - Rru_A0393 0.37 +0.0 469,438 - Rru_A0393 0.37 +0.0 469,438 - Rru_A0393 0.37 +0.0 469,438 - Rru_A0393 0.37 -0.9 469,765 + -2.0 469,765 + -0.9 469,765 + -3.0 469,766 - -1.6 469,853 + -3.6 469,853 + -3.4 469,854 - +0.0 469,879 + Rru_A0394 0.12 -0.7 470,371 + Rru_A0394 0.51 -1.4 470,371 + Rru_A0394 0.51 -1.0 470,482 + Rru_A0394 0.60 -2.3 470,483 - Rru_A0394 0.60 -1.0 470,483 - Rru_A0394 0.60 +0.0 470,875 + -1.6 470,891 + -4.2 470,891 + +0.0 470,891 + -1.9 471,027 + +1.0 471,027 + +1.3 471,028 - +0.0 471,350 + Rru_A0395 0.15 -0.6 471,748 + Rru_A0395 0.58 +1.1 471,800 + Rru_A0395 0.63 +0.2 471,800 + Rru_A0395 0.63 +0.3 471,800 + Rru_A0395 0.63 +0.2 471,801 - Rru_A0395 0.63 +0.0 471,801 - Rru_A0395 0.63 +0.9 471,802 + Rru_A0395 0.64 +0.7 471,802 + Rru_A0395 0.64 +0.0 471,802 + Rru_A0395 0.64 +0.0 471,802 + Rru_A0395 0.64 +0.7 471,802 + Rru_A0395 0.64 -0.1 471,803 - Rru_A0395 0.64 +0.6 471,803 - Rru_A0395 0.64 +0.0 471,803 - Rru_A0395 0.64 -0.1 471,803 - Rru_A0395 0.64 +0.0 471,934 + Rru_A0395 0.78 +0.0 471,934 + Rru_A0395 0.78 -0.2 471,934 + Rru_A0395 0.78 +0.0 471,934 + Rru_A0395 0.78 -0.1 471,935 - Rru_A0395 0.78 +0.8 471,935 - Rru_A0395 0.78 +0.1
Or see this region's nucleotide sequence