Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0389

Experiment: acetate; Light intensity 9 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0387 and Rru_A0388 are separated by 74 nucleotidesRru_A0388 and Rru_A0389 overlap by 59 nucleotidesRru_A0389 and Rru_A0390 are separated by 188 nucleotides Rru_A0387: Rru_A0387 - Antibiotic biosynthesis monooxygenase (NCBI), at 465,098 to 465,487 _A0387 Rru_A0388: Rru_A0388 - Protein of unknown function DUF6, transmembrane (NCBI), at 465,562 to 466,524 _A0388 Rru_A0389: Rru_A0389 - Antibiotic biosynthesis monooxygenase (NCBI), at 466,466 to 466,756 _A0389 Rru_A0390: Rru_A0390 - hypothetical protein (NCBI), at 466,945 to 467,925 _A0390 Position (kb) 466 467Strain fitness (log2 ratio) -1 0 1 2at 465.486 kb on - strandat 465.486 kb on - strandat 465.579 kb on - strandat 465.634 kb on + strandat 465.634 kb on + strandat 465.634 kb on + strandat 465.634 kb on + strandat 465.635 kb on - strandat 465.635 kb on - strandat 465.635 kb on - strandat 465.635 kb on - strandat 465.635 kb on - strandat 465.724 kb on - strand, within Rru_A0388at 465.724 kb on - strand, within Rru_A0388at 466.064 kb on - strand, within Rru_A0388at 466.064 kb on - strand, within Rru_A0388at 466.064 kb on - strand, within Rru_A0388at 466.267 kb on + strand, within Rru_A0388at 466.267 kb on + strand, within Rru_A0388at 466.268 kb on - strand, within Rru_A0388at 466.268 kb on - strand, within Rru_A0388at 466.268 kb on - strand, within Rru_A0388at 466.318 kb on + strand, within Rru_A0388at 466.319 kb on - strand, within Rru_A0388at 466.645 kb on - strand, within Rru_A0389at 466.645 kb on - strand, within Rru_A0389at 466.645 kb on - strand, within Rru_A0389at 466.715 kb on - strand, within Rru_A0389at 466.715 kb on - strand, within Rru_A0389at 466.750 kb on + strandat 466.750 kb on + strandat 466.750 kb on + strandat 466.864 kb on + strandat 466.864 kb on + strandat 466.865 kb on - strandat 466.865 kb on - strandat 466.984 kb on + strandat 466.984 kb on + strandat 466.984 kb on + strandat 466.985 kb on - strandat 466.985 kb on - strandat 466.985 kb on - strandat 466.985 kb on - strandat 467.017 kb on + strandat 467.017 kb on + strandat 467.018 kb on - strandat 467.018 kb on - strandat 467.029 kb on + strandat 467.029 kb on + strandat 467.029 kb on + strandat 467.030 kb on - strandat 467.030 kb on - strandat 467.049 kb on + strand, within Rru_A0390at 467.143 kb on + strand, within Rru_A0390at 467.143 kb on + strand, within Rru_A0390at 467.143 kb on + strand, within Rru_A0390at 467.143 kb on + strand, within Rru_A0390at 467.144 kb on - strand, within Rru_A0390at 467.144 kb on - strand, within Rru_A0390at 467.158 kb on + strand, within Rru_A0390at 467.159 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.200 kb on - strand, within Rru_A0390at 467.331 kb on + strand, within Rru_A0390at 467.331 kb on + strand, within Rru_A0390at 467.335 kb on + strand, within Rru_A0390at 467.335 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.407 kb on + strand, within Rru_A0390at 467.408 kb on - strand, within Rru_A0390at 467.408 kb on - strand, within Rru_A0390at 467.408 kb on - strand, within Rru_A0390at 467.449 kb on - strand, within Rru_A0390

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
remove
465,486 - +0.5
465,486 - +0.7
465,579 - +1.0
465,634 + +0.5
465,634 + +0.0
465,634 + -0.2
465,634 + -1.0
465,635 - +1.2
465,635 - +2.4
465,635 - -1.6
465,635 - -0.0
465,635 - +1.0
465,724 - Rru_A0388 0.17 +0.0
465,724 - Rru_A0388 0.17 +0.5
466,064 - Rru_A0388 0.52 +0.0
466,064 - Rru_A0388 0.52 -0.1
466,064 - Rru_A0388 0.52 +0.0
466,267 + Rru_A0388 0.73 +0.0
466,267 + Rru_A0388 0.73 +0.0
466,268 - Rru_A0388 0.73 +0.4
466,268 - Rru_A0388 0.73 +0.0
466,268 - Rru_A0388 0.73 +0.3
466,318 + Rru_A0388 0.79 +0.8
466,319 - Rru_A0388 0.79 +0.5
466,645 - Rru_A0389 0.62 -1.6
466,645 - Rru_A0389 0.62 -1.6
466,645 - Rru_A0389 0.62 -0.2
466,715 - Rru_A0389 0.86 +0.4
466,715 - Rru_A0389 0.86 +0.2
466,750 + -1.6
466,750 + +0.0
466,750 + -0.3
466,864 + +0.3
466,864 + +1.0
466,865 - +0.6
466,865 - -0.4
466,984 + +0.5
466,984 + -1.0
466,984 + +0.0
466,985 - +0.0
466,985 - +0.0
466,985 - +0.0
466,985 - -0.4
467,017 + -0.2
467,017 + +0.0
467,018 - +0.0
467,018 - +0.5
467,029 + -0.1
467,029 + +0.3
467,029 + +0.6
467,030 - +0.8
467,030 - -0.7
467,049 + Rru_A0390 0.11 +0.0
467,143 + Rru_A0390 0.20 +0.7
467,143 + Rru_A0390 0.20 +0.0
467,143 + Rru_A0390 0.20 +1.1
467,143 + Rru_A0390 0.20 +0.3
467,144 - Rru_A0390 0.20 +0.0
467,144 - Rru_A0390 0.20 +0.0
467,158 + Rru_A0390 0.22 +0.5
467,159 - Rru_A0390 0.22 +0.0
467,200 - Rru_A0390 0.26 +0.3
467,200 - Rru_A0390 0.26 -0.3
467,200 - Rru_A0390 0.26 +0.3
467,200 - Rru_A0390 0.26 -0.0
467,200 - Rru_A0390 0.26 -0.6
467,200 - Rru_A0390 0.26 -0.3
467,200 - Rru_A0390 0.26 +0.2
467,331 + Rru_A0390 0.39 +0.2
467,331 + Rru_A0390 0.39 +0.0
467,335 + Rru_A0390 0.40 +0.3
467,335 + Rru_A0390 0.40 +1.6
467,407 + Rru_A0390 0.47 +0.0
467,407 + Rru_A0390 0.47 +0.0
467,407 + Rru_A0390 0.47 +0.0
467,407 + Rru_A0390 0.47 -1.0
467,407 + Rru_A0390 0.47 +0.0
467,407 + Rru_A0390 0.47 +1.6
467,407 + Rru_A0390 0.47 +0.8
467,407 + Rru_A0390 0.47 +0.7
467,407 + Rru_A0390 0.47 +0.0
467,408 - Rru_A0390 0.47 -0.2
467,408 - Rru_A0390 0.47 +0.0
467,408 - Rru_A0390 0.47 +0.3
467,449 - Rru_A0390 0.51 +1.0

Or see this region's nucleotide sequence