Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0382 and Rru_A0383 are separated by 135 nucleotides Rru_A0383 and Rru_A0384 are separated by 130 nucleotides Rru_A0384 and Rru_A0385 are separated by 305 nucleotides
Rru_A0382: Rru_A0382 - Transcriptional Regulator, MerR family (NCBI), at 460,121 to 460,585
_A0382
Rru_A0383: Rru_A0383 - SH3 domain protein (NCBI), at 460,721 to 461,086
_A0383
Rru_A0384: Rru_A0384 - NADPH-quinone reductase (NCBI), at 461,217 to 462,236
_A0384
Rru_A0385: Rru_A0385 - Gamma-glutamyltransferase (NCBI), at 462,542 to 464,272
_A0385
Position (kb) 461
462
463 Strain fitness (log2 ratio) -2
-1
0
1
2 at 460.474 kb on + strand, within Rru_A0382 at 460.475 kb on - strand, within Rru_A0382 at 460.475 kb on - strand, within Rru_A0382 at 460.637 kb on + strand at 460.737 kb on - strand at 460.737 kb on - strand at 460.821 kb on - strand, within Rru_A0383 at 460.821 kb on - strand, within Rru_A0383 at 460.821 kb on - strand, within Rru_A0383 at 460.821 kb on - strand, within Rru_A0383 at 460.850 kb on + strand, within Rru_A0383 at 460.850 kb on + strand, within Rru_A0383 at 460.850 kb on + strand, within Rru_A0383 at 461.001 kb on + strand, within Rru_A0383 at 461.002 kb on - strand, within Rru_A0383 at 461.067 kb on + strand at 461.067 kb on + strand at 461.068 kb on - strand at 461.084 kb on + strand at 461.084 kb on + strand at 461.093 kb on - strand at 461.185 kb on + strand at 461.365 kb on - strand, within Rru_A0384 at 461.365 kb on - strand, within Rru_A0384 at 461.505 kb on + strand, within Rru_A0384 at 461.505 kb on + strand, within Rru_A0384 at 461.506 kb on - strand, within Rru_A0384 at 461.553 kb on + strand, within Rru_A0384 at 461.562 kb on + strand, within Rru_A0384 at 461.562 kb on + strand, within Rru_A0384 at 461.562 kb on + strand, within Rru_A0384 at 461.562 kb on + strand, within Rru_A0384 at 461.562 kb on + strand, within Rru_A0384 at 461.563 kb on - strand, within Rru_A0384 at 461.563 kb on - strand, within Rru_A0384 at 461.883 kb on + strand, within Rru_A0384 at 461.884 kb on - strand, within Rru_A0384 at 461.884 kb on - strand, within Rru_A0384 at 462.146 kb on + strand at 462.146 kb on + strand at 462.146 kb on + strand at 462.147 kb on - strand at 462.147 kb on - strand at 462.154 kb on - strand at 462.213 kb on - strand at 462.213 kb on - strand at 462.213 kb on - strand at 462.328 kb on + strand at 462.414 kb on + strand at 462.415 kb on - strand at 462.415 kb on - strand at 462.415 kb on - strand at 462.415 kb on - strand at 462.800 kb on - strand, within Rru_A0385 at 462.944 kb on + strand, within Rru_A0385
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 460,474 + Rru_A0382 0.76 +0.0 460,475 - Rru_A0382 0.76 -0.4 460,475 - Rru_A0382 0.76 +0.0 460,637 + +2.0 460,737 - -1.0 460,737 - +0.5 460,821 - Rru_A0383 0.27 +0.0 460,821 - Rru_A0383 0.27 +0.9 460,821 - Rru_A0383 0.27 -0.5 460,821 - Rru_A0383 0.27 -0.1 460,850 + Rru_A0383 0.35 +0.0 460,850 + Rru_A0383 0.35 +0.0 460,850 + Rru_A0383 0.35 -0.1 461,001 + Rru_A0383 0.77 +0.4 461,002 - Rru_A0383 0.77 +0.4 461,067 + -0.1 461,067 + +0.0 461,068 - +0.3 461,084 + +0.0 461,084 + +0.0 461,093 - +0.0 461,185 + -1.0 461,365 - Rru_A0384 0.15 +0.3 461,365 - Rru_A0384 0.15 +0.0 461,505 + Rru_A0384 0.28 +0.1 461,505 + Rru_A0384 0.28 +1.2 461,506 - Rru_A0384 0.28 -1.0 461,553 + Rru_A0384 0.33 +0.0 461,562 + Rru_A0384 0.34 +1.2 461,562 + Rru_A0384 0.34 -0.0 461,562 + Rru_A0384 0.34 +0.1 461,562 + Rru_A0384 0.34 +0.0 461,562 + Rru_A0384 0.34 +0.0 461,563 - Rru_A0384 0.34 +1.0 461,563 - Rru_A0384 0.34 +0.0 461,883 + Rru_A0384 0.65 +0.2 461,884 - Rru_A0384 0.65 +0.3 461,884 - Rru_A0384 0.65 +0.8 462,146 + +0.0 462,146 + +1.8 462,146 + +0.2 462,147 - -0.2 462,147 - +0.0 462,154 - +0.0 462,213 - -0.7 462,213 - +0.4 462,213 - +0.5 462,328 + +1.3 462,414 + -0.5 462,415 - +0.0 462,415 - +0.9 462,415 - +0.6 462,415 - -2.0 462,800 - Rru_A0385 0.15 +0.0 462,944 + Rru_A0385 0.23 +0.0
Or see this region's nucleotide sequence