Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0381 and Rru_A0382 are separated by 69 nucleotides Rru_A0382 and Rru_A0383 are separated by 135 nucleotides Rru_A0383 and Rru_A0384 are separated by 130 nucleotides
Rru_A0381: Rru_A0381 - Major facilitator superfamily transporter MFS_1 (NCBI), at 458,807 to 460,051
_A0381
Rru_A0382: Rru_A0382 - Transcriptional Regulator, MerR family (NCBI), at 460,121 to 460,585
_A0382
Rru_A0383: Rru_A0383 - SH3 domain protein (NCBI), at 460,721 to 461,086
_A0383
Rru_A0384: Rru_A0384 - NADPH-quinone reductase (NCBI), at 461,217 to 462,236
_A0384
Position (kb) 460
461 Strain fitness (log2 ratio) -1
0
1
2 at 459.138 kb on + strand, within Rru_A0381 at 459.138 kb on + strand, within Rru_A0381 at 459.138 kb on + strand, within Rru_A0381 at 459.345 kb on + strand, within Rru_A0381 at 459.345 kb on + strand, within Rru_A0381 at 459.345 kb on + strand, within Rru_A0381 at 459.345 kb on + strand, within Rru_A0381 at 459.345 kb on + strand, within Rru_A0381 at 459.346 kb on - strand, within Rru_A0381 at 459.346 kb on - strand, within Rru_A0381 at 459.346 kb on - strand, within Rru_A0381 at 459.346 kb on - strand, within Rru_A0381 at 459.346 kb on - strand, within Rru_A0381 at 459.346 kb on - strand, within Rru_A0381 at 459.671 kb on - strand, within Rru_A0381 at 459.815 kb on + strand, within Rru_A0381 at 459.816 kb on - strand, within Rru_A0381 at 459.816 kb on - strand, within Rru_A0381 at 459.816 kb on - strand, within Rru_A0381 at 459.877 kb on - strand, within Rru_A0381 at 460.004 kb on - strand at 460.051 kb on + strand at 460.052 kb on - strand at 460.184 kb on + strand, within Rru_A0382 at 460.185 kb on - strand, within Rru_A0382 at 460.474 kb on + strand, within Rru_A0382 at 460.475 kb on - strand, within Rru_A0382 at 460.475 kb on - strand, within Rru_A0382 at 460.637 kb on + strand at 460.737 kb on - strand at 460.737 kb on - strand at 460.821 kb on - strand, within Rru_A0383 at 460.821 kb on - strand, within Rru_A0383 at 460.821 kb on - strand, within Rru_A0383 at 460.821 kb on - strand, within Rru_A0383 at 460.850 kb on + strand, within Rru_A0383 at 460.850 kb on + strand, within Rru_A0383 at 460.850 kb on + strand, within Rru_A0383 at 461.001 kb on + strand, within Rru_A0383 at 461.002 kb on - strand, within Rru_A0383 at 461.067 kb on + strand at 461.067 kb on + strand at 461.068 kb on - strand at 461.084 kb on + strand at 461.084 kb on + strand at 461.093 kb on - strand at 461.185 kb on + strand at 461.365 kb on - strand, within Rru_A0384 at 461.365 kb on - strand, within Rru_A0384 at 461.505 kb on + strand, within Rru_A0384 at 461.505 kb on + strand, within Rru_A0384 at 461.506 kb on - strand, within Rru_A0384 at 461.553 kb on + strand, within Rru_A0384 at 461.562 kb on + strand, within Rru_A0384 at 461.562 kb on + strand, within Rru_A0384 at 461.562 kb on + strand, within Rru_A0384 at 461.562 kb on + strand, within Rru_A0384 at 461.562 kb on + strand, within Rru_A0384 at 461.563 kb on - strand, within Rru_A0384 at 461.563 kb on - strand, within Rru_A0384
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 459,138 + Rru_A0381 0.27 +1.0 459,138 + Rru_A0381 0.27 -0.2 459,138 + Rru_A0381 0.27 +0.5 459,345 + Rru_A0381 0.43 +0.6 459,345 + Rru_A0381 0.43 +0.0 459,345 + Rru_A0381 0.43 +0.0 459,345 + Rru_A0381 0.43 +0.0 459,345 + Rru_A0381 0.43 +1.0 459,346 - Rru_A0381 0.43 +0.0 459,346 - Rru_A0381 0.43 +0.0 459,346 - Rru_A0381 0.43 +0.6 459,346 - Rru_A0381 0.43 +0.3 459,346 - Rru_A0381 0.43 +0.0 459,346 - Rru_A0381 0.43 +0.6 459,671 - Rru_A0381 0.69 +0.2 459,815 + Rru_A0381 0.81 +1.6 459,816 - Rru_A0381 0.81 +0.0 459,816 - Rru_A0381 0.81 +0.0 459,816 - Rru_A0381 0.81 +0.0 459,877 - Rru_A0381 0.86 +0.0 460,004 - +0.3 460,051 + +1.3 460,052 - +0.0 460,184 + Rru_A0382 0.14 -0.7 460,185 - Rru_A0382 0.14 -0.4 460,474 + Rru_A0382 0.76 +0.0 460,475 - Rru_A0382 0.76 -0.4 460,475 - Rru_A0382 0.76 +0.0 460,637 + +2.0 460,737 - -1.0 460,737 - +0.5 460,821 - Rru_A0383 0.27 +0.0 460,821 - Rru_A0383 0.27 +0.9 460,821 - Rru_A0383 0.27 -0.5 460,821 - Rru_A0383 0.27 -0.1 460,850 + Rru_A0383 0.35 +0.0 460,850 + Rru_A0383 0.35 +0.0 460,850 + Rru_A0383 0.35 -0.1 461,001 + Rru_A0383 0.77 +0.4 461,002 - Rru_A0383 0.77 +0.4 461,067 + -0.1 461,067 + +0.0 461,068 - +0.3 461,084 + +0.0 461,084 + +0.0 461,093 - +0.0 461,185 + -1.0 461,365 - Rru_A0384 0.15 +0.3 461,365 - Rru_A0384 0.15 +0.0 461,505 + Rru_A0384 0.28 +0.1 461,505 + Rru_A0384 0.28 +1.2 461,506 - Rru_A0384 0.28 -1.0 461,553 + Rru_A0384 0.33 +0.0 461,562 + Rru_A0384 0.34 +1.2 461,562 + Rru_A0384 0.34 -0.0 461,562 + Rru_A0384 0.34 +0.1 461,562 + Rru_A0384 0.34 +0.0 461,562 + Rru_A0384 0.34 +0.0 461,563 - Rru_A0384 0.34 +1.0 461,563 - Rru_A0384 0.34 +0.0
Or see this region's nucleotide sequence