Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0372

Experiment: acetate; Light intensity 9 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0371 and Rru_A0372 are separated by 52 nucleotidesRru_A0372 and Rru_A0373 are separated by 131 nucleotidesRru_A0373 and Rru_A0374 are separated by 49 nucleotides Rru_A0371: Rru_A0371 - Double-transmembrane region-like (NCBI), at 445,106 to 447,889 _A0371 Rru_A0372: Rru_A0372 - hypothetical protein (NCBI), at 447,942 to 450,014 _A0372 Rru_A0373: Rru_A0373 - flavodoxin/nitric oxide synthase (NCBI), at 450,146 to 450,754 _A0373 Rru_A0374: Rru_A0374 - hypothetical protein (NCBI), at 450,804 to 451,733 _A0374 Position (kb) 447 448 449 450 451Strain fitness (log2 ratio) -2 -1 0 1 2at 447.254 kb on + strand, within Rru_A0371at 447.254 kb on + strand, within Rru_A0371at 447.254 kb on + strand, within Rru_A0371at 447.255 kb on - strand, within Rru_A0371at 447.255 kb on - strand, within Rru_A0371at 447.408 kb on - strand, within Rru_A0371at 447.408 kb on - strand, within Rru_A0371at 447.470 kb on + strand, within Rru_A0371at 447.470 kb on + strand, within Rru_A0371at 447.470 kb on + strand, within Rru_A0371at 447.470 kb on + strand, within Rru_A0371at 447.470 kb on + strand, within Rru_A0371at 447.471 kb on - strand, within Rru_A0371at 447.472 kb on + strand, within Rru_A0371at 447.472 kb on + strand, within Rru_A0371at 447.472 kb on + strand, within Rru_A0371at 447.472 kb on + strand, within Rru_A0371at 447.473 kb on - strand, within Rru_A0371at 447.473 kb on - strand, within Rru_A0371at 447.473 kb on - strand, within Rru_A0371at 447.473 kb on - strand, within Rru_A0371at 447.473 kb on - strand, within Rru_A0371at 447.599 kb on + strand, within Rru_A0371at 447.600 kb on - strand, within Rru_A0371at 447.600 kb on - strand, within Rru_A0371at 447.600 kb on - strand, within Rru_A0371at 447.600 kb on - strand, within Rru_A0371at 447.744 kb on - strandat 447.744 kb on - strandat 447.791 kb on + strandat 447.818 kb on + strandat 447.818 kb on + strandat 447.818 kb on + strandat 447.818 kb on + strandat 447.818 kb on + strandat 447.819 kb on - strandat 447.819 kb on - strandat 447.819 kb on - strandat 447.819 kb on - strandat 447.819 kb on - strandat 447.836 kb on + strandat 447.836 kb on + strandat 447.887 kb on + strandat 447.887 kb on + strandat 447.887 kb on + strandat 447.887 kb on + strandat 447.887 kb on + strandat 447.888 kb on - strandat 447.888 kb on - strandat 447.953 kb on + strandat 447.954 kb on - strandat 447.959 kb on + strandat 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.445 kb on - strand, within Rru_A0372at 448.445 kb on - strand, within Rru_A0372at 448.445 kb on - strand, within Rru_A0372at 448.854 kb on - strand, within Rru_A0372at 449.044 kb on - strand, within Rru_A0372at 449.044 kb on - strand, within Rru_A0372at 449.044 kb on - strand, within Rru_A0372at 449.044 kb on - strand, within Rru_A0372at 449.044 kb on - strand, within Rru_A0372at 449.044 kb on - strand, within Rru_A0372at 449.064 kb on + strand, within Rru_A0372at 449.065 kb on - strand, within Rru_A0372at 449.065 kb on - strand, within Rru_A0372at 449.109 kb on + strand, within Rru_A0372at 449.402 kb on + strand, within Rru_A0372at 449.402 kb on + strand, within Rru_A0372at 449.682 kb on + strand, within Rru_A0372at 449.682 kb on + strand, within Rru_A0372at 449.682 kb on + strand, within Rru_A0372at 449.683 kb on - strand, within Rru_A0372at 449.685 kb on - strand, within Rru_A0372at 450.062 kb on + strandat 450.062 kb on + strandat 450.101 kb on + strandat 450.102 kb on - strandat 450.109 kb on + strandat 450.109 kb on + strandat 450.109 kb on + strandat 450.110 kb on - strandat 450.110 kb on - strandat 450.176 kb on + strandat 450.176 kb on + strandat 450.176 kb on + strandat 450.176 kb on + strandat 450.176 kb on + strandat 450.177 kb on - strandat 450.179 kb on + strandat 450.188 kb on + strandat 450.188 kb on + strandat 450.188 kb on + strandat 450.188 kb on + strandat 450.189 kb on - strandat 450.189 kb on - strandat 450.189 kb on - strandat 450.189 kb on - strandat 450.280 kb on + strand, within Rru_A0373at 450.280 kb on + strand, within Rru_A0373at 450.280 kb on + strand, within Rru_A0373at 450.280 kb on + strand, within Rru_A0373at 450.280 kb on + strand, within Rru_A0373at 450.280 kb on + strand, within Rru_A0373at 450.280 kb on + strand, within Rru_A0373at 450.281 kb on - strand, within Rru_A0373at 450.281 kb on - strand, within Rru_A0373at 450.281 kb on - strand, within Rru_A0373at 450.362 kb on + strand, within Rru_A0373at 450.403 kb on + strand, within Rru_A0373at 450.403 kb on + strand, within Rru_A0373at 450.403 kb on + strand, within Rru_A0373at 450.403 kb on + strand, within Rru_A0373at 450.404 kb on - strand, within Rru_A0373at 450.404 kb on - strand, within Rru_A0373at 450.404 kb on - strand, within Rru_A0373at 450.404 kb on - strand, within Rru_A0373at 450.404 kb on - strand, within Rru_A0373at 450.404 kb on - strand, within Rru_A0373at 450.539 kb on + strand, within Rru_A0373at 450.540 kb on - strand, within Rru_A0373at 450.540 kb on - strand, within Rru_A0373at 450.843 kb on + strandat 450.843 kb on + strandat 450.844 kb on - strandat 450.948 kb on + strand, within Rru_A0374at 450.948 kb on + strand, within Rru_A0374at 450.948 kb on + strand, within Rru_A0374at 450.957 kb on + strand, within Rru_A0374at 450.957 kb on + strand, within Rru_A0374at 450.957 kb on + strand, within Rru_A0374at 450.957 kb on + strand, within Rru_A0374at 450.957 kb on + strand, within Rru_A0374at 450.958 kb on - strand, within Rru_A0374at 450.958 kb on - strand, within Rru_A0374

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
remove
447,254 + Rru_A0371 0.77 +0.0
447,254 + Rru_A0371 0.77 +0.0
447,254 + Rru_A0371 0.77 +0.0
447,255 - Rru_A0371 0.77 +2.0
447,255 - Rru_A0371 0.77 +0.0
447,408 - Rru_A0371 0.83 +0.0
447,408 - Rru_A0371 0.83 +0.0
447,470 + Rru_A0371 0.85 +0.0
447,470 + Rru_A0371 0.85 +0.0
447,470 + Rru_A0371 0.85 +0.0
447,470 + Rru_A0371 0.85 -2.0
447,470 + Rru_A0371 0.85 +0.0
447,471 - Rru_A0371 0.85 +0.0
447,472 + Rru_A0371 0.85 +0.0
447,472 + Rru_A0371 0.85 +0.0
447,472 + Rru_A0371 0.85 +0.0
447,472 + Rru_A0371 0.85 +0.0
447,473 - Rru_A0371 0.85 +0.0
447,473 - Rru_A0371 0.85 -1.0
447,473 - Rru_A0371 0.85 +0.2
447,473 - Rru_A0371 0.85 +0.0
447,473 - Rru_A0371 0.85 +0.0
447,599 + Rru_A0371 0.90 +0.0
447,600 - Rru_A0371 0.90 +0.0
447,600 - Rru_A0371 0.90 +0.0
447,600 - Rru_A0371 0.90 -1.6
447,600 - Rru_A0371 0.90 +0.0
447,744 - +0.0
447,744 - +0.0
447,791 + +0.0
447,818 + +0.0
447,818 + +0.0
447,818 + +0.0
447,818 + +0.0
447,818 + +0.0
447,819 - +0.0
447,819 - +0.0
447,819 - +0.0
447,819 - +0.0
447,819 - +0.0
447,836 + +0.0
447,836 + +0.6
447,887 + +0.4
447,887 + +0.8
447,887 + +0.0
447,887 + +0.4
447,887 + +0.0
447,888 - +0.0
447,888 - +0.9
447,953 + +0.0
447,954 - +0.0
447,959 + +0.0
448,444 + Rru_A0372 0.24 +0.0
448,444 + Rru_A0372 0.24 -1.0
448,444 + Rru_A0372 0.24 -1.1
448,444 + Rru_A0372 0.24 +1.6
448,444 + Rru_A0372 0.24 +0.0
448,444 + Rru_A0372 0.24 +0.0
448,444 + Rru_A0372 0.24 +0.0
448,444 + Rru_A0372 0.24 +0.0
448,445 - Rru_A0372 0.24 +0.0
448,445 - Rru_A0372 0.24 +1.0
448,445 - Rru_A0372 0.24 +0.0
448,854 - Rru_A0372 0.44 -1.2
449,044 - Rru_A0372 0.53 +0.0
449,044 - Rru_A0372 0.53 +0.0
449,044 - Rru_A0372 0.53 +0.0
449,044 - Rru_A0372 0.53 +0.0
449,044 - Rru_A0372 0.53 +0.0
449,044 - Rru_A0372 0.53 +0.0
449,064 + Rru_A0372 0.54 +0.0
449,065 - Rru_A0372 0.54 +0.0
449,065 - Rru_A0372 0.54 -1.0
449,109 + Rru_A0372 0.56 +0.0
449,402 + Rru_A0372 0.70 +0.0
449,402 + Rru_A0372 0.70 +0.0
449,682 + Rru_A0372 0.84 +0.0
449,682 + Rru_A0372 0.84 +0.0
449,682 + Rru_A0372 0.84 +0.0
449,683 - Rru_A0372 0.84 +0.0
449,685 - Rru_A0372 0.84 -0.1
450,062 + -1.0
450,062 + +0.0
450,101 + +0.0
450,102 - -1.0
450,109 + +0.0
450,109 + -1.0
450,109 + +1.3
450,110 - +0.9
450,110 - -0.1
450,176 + +0.0
450,176 + +0.0
450,176 + +0.4
450,176 + +0.6
450,176 + -0.1
450,177 - +1.7
450,179 + -0.2
450,188 + +0.1
450,188 + +0.6
450,188 + +0.0
450,188 + +0.0
450,189 - +0.0
450,189 - +0.0
450,189 - +0.0
450,189 - +0.0
450,280 + Rru_A0373 0.22 +1.7
450,280 + Rru_A0373 0.22 +0.0
450,280 + Rru_A0373 0.22 +1.0
450,280 + Rru_A0373 0.22 +0.0
450,280 + Rru_A0373 0.22 +0.5
450,280 + Rru_A0373 0.22 +0.0
450,280 + Rru_A0373 0.22 +0.0
450,281 - Rru_A0373 0.22 +0.0
450,281 - Rru_A0373 0.22 +1.1
450,281 - Rru_A0373 0.22 +0.1
450,362 + Rru_A0373 0.35 +0.0
450,403 + Rru_A0373 0.42 +0.0
450,403 + Rru_A0373 0.42 +0.0
450,403 + Rru_A0373 0.42 -0.2
450,403 + Rru_A0373 0.42 +0.0
450,404 - Rru_A0373 0.42 +0.0
450,404 - Rru_A0373 0.42 +0.0
450,404 - Rru_A0373 0.42 +0.3
450,404 - Rru_A0373 0.42 +0.0
450,404 - Rru_A0373 0.42 +0.1
450,404 - Rru_A0373 0.42 +0.0
450,539 + Rru_A0373 0.65 +0.4
450,540 - Rru_A0373 0.65 +0.9
450,540 - Rru_A0373 0.65 +0.0
450,843 + +0.6
450,843 + +0.0
450,844 - +0.0
450,948 + Rru_A0374 0.15 +0.9
450,948 + Rru_A0374 0.15 +0.3
450,948 + Rru_A0374 0.15 +0.8
450,957 + Rru_A0374 0.16 -0.6
450,957 + Rru_A0374 0.16 +0.2
450,957 + Rru_A0374 0.16 +0.0
450,957 + Rru_A0374 0.16 +0.0
450,957 + Rru_A0374 0.16 -1.0
450,958 - Rru_A0374 0.17 +0.0
450,958 - Rru_A0374 0.17 +0.0

Or see this region's nucleotide sequence