Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0346 and Rru_A0347 are separated by 10 nucleotides Rru_A0347 and Rru_A0348 overlap by 1 nucleotides Rru_A0348 and 11438613 are separated by 57 nucleotides 11438613 and 11580976 overlap by 28 nucleotides 11580976 and 11723368 overlap by 28 nucleotides 11723368 and 11438614 are separated by 0 nucleotides 11438614 and 11580977 overlap by 33 nucleotides 11580977 and 11723369 overlap by 33 nucleotides 11723369 and 11438615 are separated by 0 nucleotides 11438615 and 11580978 overlap by 28 nucleotides 11580978 and 11723370 overlap by 28 nucleotides 11723370 and 11438616 are separated by 0 nucleotides 11438616 and 11580979 overlap by 33 nucleotides 11580979 and 11723371 overlap by 33 nucleotides 11723371 and 11438617 are separated by 0 nucleotides 11438617 and 11580980 overlap by 28 nucleotides 11580980 and 11723372 overlap by 28 nucleotides 11723372 and 11438618 are separated by 0 nucleotides 11438618 and 11580981 overlap by 33 nucleotides 11580981 and 11723373 overlap by 33 nucleotides 11723373 and 11438619 are separated by 0 nucleotides 11438619 and 11580982 overlap by 28 nucleotides 11580982 and 11723374 overlap by 28 nucleotides 11723374 and 11438620 are separated by 0 nucleotides 11438620 and 11580983 overlap by 33 nucleotides 11580983 and 11723375 overlap by 33 nucleotides 11723375 and 11438621 are separated by 0 nucleotides 11438621 and 11580984 overlap by 28 nucleotides 11580984 and 11723376 overlap by 28 nucleotides 11723376 and 11438622 are separated by 0 nucleotides 11438622 and 11580985 overlap by 33 nucleotides 11580985 and 11723377 overlap by 33 nucleotides 11723377 and 11438623 are separated by 0 nucleotides 11438623 and 11580986 overlap by 28 nucleotides 11580986 and 11723378 overlap by 28 nucleotides 11723378 and 11438624 are separated by 0 nucleotides 11438624 and 11580987 overlap by 33 nucleotides 11580987 and 11723379 overlap by 33 nucleotides 11723379 and 11438625 are separated by 0 nucleotides 11438625 and 11580988 overlap by 28 nucleotides 11580988 and 11723380 overlap by 28 nucleotides 11723380 and 11438626 are separated by 0 nucleotides 11438626 and 11580989 overlap by 33 nucleotides 11580989 and 11723381 overlap by 33 nucleotides 11723381 and 11438627 are separated by 0 nucleotides 11438627 and 11580990 overlap by 28 nucleotides 11580990 and 11723382 overlap by 28 nucleotides 11723382 and 11438628 are separated by 0 nucleotides 11438628 and 11580991 overlap by 33 nucleotides 11580991 and 11723383 overlap by 33 nucleotides 11723383 and 11438629 are separated by 0 nucleotides 11438629 and 11580992 overlap by 28 nucleotides 11580992 and 11723384 overlap by 28 nucleotides 11723384 and 11438630 are separated by 0 nucleotides 11438630 and 11580993 overlap by 33 nucleotides 11580993 and 11723385 overlap by 33 nucleotides 11723385 and 11438631 are separated by 0 nucleotides 11438631 and 11580994 overlap by 28 nucleotides 11580994 and 11723386 overlap by 28 nucleotides 11723386 and 11438632 are separated by 0 nucleotides 11438632 and 11580995 overlap by 33 nucleotides 11580995 and 11723387 overlap by 33 nucleotides 11723387 and 11438633 are separated by 0 nucleotides 11438633 and 11580996 overlap by 28 nucleotides 11580996 and 11723388 overlap by 28 nucleotides 11723388 and 11438634 are separated by 0 nucleotides 11438634 and 11580997 overlap by 33 nucleotides 11580997 and 11723389 overlap by 33 nucleotides 11723389 and 11438635 are separated by 0 nucleotides 11438635 and 11580998 overlap by 28 nucleotides 11580998 and 11723390 overlap by 28 nucleotides 11723390 and 11438636 are separated by 0 nucleotides 11438636 and 11580999 overlap by 33 nucleotides 11580999 and 11723391 overlap by 33 nucleotides 11723391 and 11438637 are separated by 0 nucleotides 11438637 and 11581000 overlap by 28 nucleotides 11581000 and 11723392 overlap by 28 nucleotides 11723392 and 11438638 are separated by 0 nucleotides 11438638 and 11581001 overlap by 33 nucleotides 11581001 and 11723393 overlap by 33 nucleotides 11723393 and 11438639 are separated by 0 nucleotides 11438639 and 11581002 overlap by 28 nucleotides 11581002 and 11723394 overlap by 28 nucleotides 11723394 and 11438640 are separated by 0 nucleotides 11438640 and 11581003 overlap by 33 nucleotides 11581003 and 11723395 overlap by 33 nucleotides 11723395 and 11438641 are separated by 0 nucleotides 11438641 and 11581004 overlap by 28 nucleotides 11581004 and 11723396 overlap by 28 nucleotides 11723396 and 11438642 are separated by 0 nucleotides 11438642 and 11581005 overlap by 33 nucleotides 11581005 and 11723397 overlap by 33 nucleotides 11723397 and 11438643 are separated by 0 nucleotides 11438643 and 11581006 overlap by 28 nucleotides 11581006 and 11723398 overlap by 28 nucleotides
Rru_A0346: Rru_A0346 - CRISPR-associated protein, CT1974 family (NCBI), at 418,329 to 419,060
_A0346
Rru_A0347: Rru_A0347 - Protein of unknown function DUF48 (NCBI), at 419,071 to 419,952
_A0347
Rru_A0348: Rru_A0348 - CRISPR-associated protein, Cas2 (NCBI), at 419,952 to 420,275
_A0348
11438613 - no description, at 420,333 to 420,360
11438613
11580976 - no description, at 420,333 to 420,360
11580976
11723368 - no description, at 420,333 to 420,360
11723368
11438614 - no description, at 420,361 to 420,393
11438614
11580977 - no description, at 420,361 to 420,393
11580977
11723369 - no description, at 420,361 to 420,393
11723369
11438615 - no description, at 420,394 to 420,421
11438615
11580978 - no description, at 420,394 to 420,421
11580978
11723370 - no description, at 420,394 to 420,421
11723370
11438616 - no description, at 420,422 to 420,454
11438616
11580979 - no description, at 420,422 to 420,454
11580979
11723371 - no description, at 420,422 to 420,454
11723371
11438617 - no description, at 420,455 to 420,482
11438617
11580980 - no description, at 420,455 to 420,482
11580980
11723372 - no description, at 420,455 to 420,482
11723372
11438618 - no description, at 420,483 to 420,515
11438618
11580981 - no description, at 420,483 to 420,515
11580981
11723373 - no description, at 420,483 to 420,515
11723373
11438619 - no description, at 420,516 to 420,543
11438619
11580982 - no description, at 420,516 to 420,543
11580982
11723374 - no description, at 420,516 to 420,543
11723374
11438620 - no description, at 420,544 to 420,576
11438620
11580983 - no description, at 420,544 to 420,576
11580983
11723375 - no description, at 420,544 to 420,576
11723375
11438621 - no description, at 420,577 to 420,604
11438621
11580984 - no description, at 420,577 to 420,604
11580984
11723376 - no description, at 420,577 to 420,604
11723376
11438622 - no description, at 420,605 to 420,637
11438622
11580985 - no description, at 420,605 to 420,637
11580985
11723377 - no description, at 420,605 to 420,637
11723377
11438623 - no description, at 420,638 to 420,665
11438623
11580986 - no description, at 420,638 to 420,665
11580986
11723378 - no description, at 420,638 to 420,665
11723378
11438624 - no description, at 420,666 to 420,698
11438624
11580987 - no description, at 420,666 to 420,698
11580987
11723379 - no description, at 420,666 to 420,698
11723379
11438625 - no description, at 420,699 to 420,726
11438625
11580988 - no description, at 420,699 to 420,726
11580988
11723380 - no description, at 420,699 to 420,726
11723380
11438626 - no description, at 420,727 to 420,759
11438626
11580989 - no description, at 420,727 to 420,759
11580989
11723381 - no description, at 420,727 to 420,759
11723381
11438627 - no description, at 420,760 to 420,787
11438627
11580990 - no description, at 420,760 to 420,787
11580990
11723382 - no description, at 420,760 to 420,787
11723382
11438628 - no description, at 420,788 to 420,820
11438628
11580991 - no description, at 420,788 to 420,820
11580991
11723383 - no description, at 420,788 to 420,820
11723383
11438629 - no description, at 420,821 to 420,848
11438629
11580992 - no description, at 420,821 to 420,848
11580992
11723384 - no description, at 420,821 to 420,848
11723384
11438630 - no description, at 420,849 to 420,881
11438630
11580993 - no description, at 420,849 to 420,881
11580993
11723385 - no description, at 420,849 to 420,881
11723385
11438631 - no description, at 420,882 to 420,909
11438631
11580994 - no description, at 420,882 to 420,909
11580994
11723386 - no description, at 420,882 to 420,909
11723386
11438632 - no description, at 420,910 to 420,942
11438632
11580995 - no description, at 420,910 to 420,942
11580995
11723387 - no description, at 420,910 to 420,942
11723387
11438633 - no description, at 420,943 to 420,970
11438633
11580996 - no description, at 420,943 to 420,970
11580996
11723388 - no description, at 420,943 to 420,970
11723388
11438634 - no description, at 420,971 to 421,003
11438634
11580997 - no description, at 420,971 to 421,003
11580997
11723389 - no description, at 420,971 to 421,003
11723389
11438635 - no description, at 421,004 to 421,031
11438635
11580998 - no description, at 421,004 to 421,031
11580998
11723390 - no description, at 421,004 to 421,031
11723390
11438636 - no description, at 421,032 to 421,064
11438636
11580999 - no description, at 421,032 to 421,064
11580999
11723391 - no description, at 421,032 to 421,064
11723391
11438637 - no description, at 421,065 to 421,092
11438637
11581000 - no description, at 421,065 to 421,092
11581000
11723392 - no description, at 421,065 to 421,092
11723392
11438638 - no description, at 421,093 to 421,125
11438638
11581001 - no description, at 421,093 to 421,125
11581001
11723393 - no description, at 421,093 to 421,125
11723393
11438639 - no description, at 421,126 to 421,153
11438639
11581002 - no description, at 421,126 to 421,153
11581002
11723394 - no description, at 421,126 to 421,153
11723394
11438640 - no description, at 421,154 to 421,186
11438640
11581003 - no description, at 421,154 to 421,186
11581003
11723395 - no description, at 421,154 to 421,186
11723395
11438641 - no description, at 421,187 to 421,214
11438641
11581004 - no description, at 421,187 to 421,214
11581004
11723396 - no description, at 421,187 to 421,214
11723396
11438642 - no description, at 421,215 to 421,247
11438642
11581005 - no description, at 421,215 to 421,247
11581005
11723397 - no description, at 421,215 to 421,247
11723397
11438643 - no description, at 421,248 to 421,275
11438643
11581006 - no description, at 421,248 to 421,275
11581006
11723398 - no description, at 421,248 to 421,275
11723398
Position (kb) 419
420
421 Strain fitness (log2 ratio) -1
0
1
2 at 419.353 kb on + strand, within Rru_A0347 at 419.354 kb on - strand, within Rru_A0347 at 419.355 kb on + strand, within Rru_A0347 at 419.405 kb on + strand, within Rru_A0347 at 419.406 kb on - strand, within Rru_A0347 at 419.406 kb on - strand, within Rru_A0347 at 419.455 kb on + strand, within Rru_A0347 at 419.455 kb on + strand, within Rru_A0347 at 419.455 kb on + strand, within Rru_A0347 at 419.455 kb on + strand, within Rru_A0347 at 419.455 kb on + strand, within Rru_A0347 at 419.455 kb on + strand, within Rru_A0347 at 419.455 kb on + strand, within Rru_A0347 at 419.456 kb on - strand, within Rru_A0347 at 419.456 kb on - strand, within Rru_A0347 at 419.456 kb on - strand, within Rru_A0347 at 419.456 kb on - strand, within Rru_A0347 at 419.539 kb on + strand, within Rru_A0347 at 419.561 kb on - strand, within Rru_A0347 at 419.567 kb on + strand, within Rru_A0347 at 419.567 kb on + strand, within Rru_A0347 at 419.568 kb on - strand, within Rru_A0347 at 419.568 kb on - strand, within Rru_A0347 at 419.587 kb on + strand, within Rru_A0347 at 419.588 kb on - strand, within Rru_A0347 at 419.588 kb on - strand, within Rru_A0347 at 419.588 kb on - strand, within Rru_A0347 at 419.773 kb on - strand, within Rru_A0347 at 419.884 kb on - strand at 420.105 kb on + strand, within Rru_A0348 at 420.106 kb on - strand, within Rru_A0348 at 420.106 kb on - strand, within Rru_A0348 at 420.203 kb on + strand, within Rru_A0348 at 420.306 kb on - strand at 420.306 kb on - strand at 420.312 kb on + strand at 420.313 kb on - strand at 420.313 kb on - strand at 420.313 kb on - strand at 420.355 kb on + strand at 420.355 kb on + strand at 420.362 kb on + strand at 420.362 kb on + strand at 420.362 kb on + strand at 420.363 kb on - strand at 420.363 kb on - strand at 420.365 kb on + strand at 420.366 kb on - strand at 420.416 kb on + strand at 420.417 kb on - strand at 420.417 kb on - strand at 420.477 kb on + strand at 420.478 kb on - strand at 420.513 kb on + strand at 420.694 kb on + strand at 420.694 kb on + strand at 420.694 kb on + strand at 420.695 kb on - strand at 420.722 kb on - strand at 420.722 kb on - strand at 420.782 kb on + strand at 420.791 kb on - strand at 420.791 kb on - strand at 420.791 kb on - strand at 420.791 kb on - strand at 420.791 kb on - strand at 420.791 kb on - strand at 420.791 kb on - strand at 420.793 kb on + strand at 420.793 kb on + strand at 420.794 kb on - strand at 420.809 kb on + strand at 420.809 kb on + strand at 420.844 kb on - strand at 420.844 kb on - strand at 420.851 kb on + strand at 420.852 kb on - strand at 420.904 kb on + strand at 420.965 kb on + strand at 420.965 kb on + strand at 420.966 kb on - strand at 420.976 kb on + strand at 420.977 kb on - strand at 421.027 kb on - strand at 421.056 kb on + strand at 421.056 kb on + strand at 421.056 kb on + strand at 421.056 kb on + strand at 421.056 kb on + strand at 421.056 kb on + strand at 421.057 kb on - strand at 421.057 kb on - strand at 421.057 kb on - strand at 421.057 kb on - strand at 421.057 kb on - strand at 421.057 kb on - strand at 421.057 kb on - strand at 421.057 kb on - strand at 421.057 kb on - strand at 421.057 kb on - strand at 421.057 kb on - strand at 421.057 kb on - strand at 421.087 kb on + strand at 421.087 kb on + strand at 421.088 kb on - strand at 421.148 kb on + strand at 421.149 kb on - strand at 421.149 kb on - strand at 421.178 kb on + strand at 421.209 kb on + strand at 421.210 kb on - strand at 421.218 kb on + strand at 421.218 kb on + strand at 421.219 kb on - strand at 421.245 kb on + strand at 421.270 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 419,353 + Rru_A0347 0.32 +1.0 419,354 - Rru_A0347 0.32 +0.1 419,355 + Rru_A0347 0.32 +0.0 419,405 + Rru_A0347 0.38 +0.1 419,406 - Rru_A0347 0.38 +0.0 419,406 - Rru_A0347 0.38 +0.2 419,455 + Rru_A0347 0.44 +0.9 419,455 + Rru_A0347 0.44 +0.0 419,455 + Rru_A0347 0.44 +0.0 419,455 + Rru_A0347 0.44 +1.5 419,455 + Rru_A0347 0.44 +0.5 419,455 + Rru_A0347 0.44 +0.2 419,455 + Rru_A0347 0.44 +0.6 419,456 - Rru_A0347 0.44 +0.0 419,456 - Rru_A0347 0.44 +0.0 419,456 - Rru_A0347 0.44 +0.0 419,456 - Rru_A0347 0.44 +0.0 419,539 + Rru_A0347 0.53 +0.0 419,561 - Rru_A0347 0.56 +0.0 419,567 + Rru_A0347 0.56 +0.0 419,567 + Rru_A0347 0.56 +0.0 419,568 - Rru_A0347 0.56 +0.2 419,568 - Rru_A0347 0.56 -0.2 419,587 + Rru_A0347 0.59 +0.1 419,588 - Rru_A0347 0.59 -0.6 419,588 - Rru_A0347 0.59 +1.6 419,588 - Rru_A0347 0.59 +1.8 419,773 - Rru_A0347 0.80 +1.5 419,884 - +0.7 420,105 + Rru_A0348 0.47 +1.0 420,106 - Rru_A0348 0.48 +0.0 420,106 - Rru_A0348 0.48 +0.0 420,203 + Rru_A0348 0.77 +0.0 420,306 - +0.5 420,306 - +0.0 420,312 + +0.4 420,313 - +0.0 420,313 - +0.0 420,313 - +0.2 420,355 + +0.6 420,355 + +0.7 420,362 + +0.5 420,362 + +1.0 420,362 + +0.0 420,363 - -0.5 420,363 - +0.0 420,365 + +0.6 420,366 - +0.0 420,416 + +0.0 420,417 - -0.1 420,417 - +0.4 420,477 + +0.4 420,478 - +0.0 420,513 + +0.0 420,694 + +0.0 420,694 + +0.0 420,694 + +1.2 420,695 - +0.0 420,722 - +0.0 420,722 - +0.3 420,782 + +0.7 420,791 - +0.5 420,791 - +0.0 420,791 - -1.0 420,791 - +0.6 420,791 - +0.5 420,791 - +1.3 420,791 - +0.2 420,793 + +0.8 420,793 + +2.5 420,794 - +0.5 420,809 + +0.0 420,809 + +0.0 420,844 - +0.0 420,844 - +0.4 420,851 + +1.0 420,852 - +0.0 420,904 + +0.0 420,965 + -1.0 420,965 + +0.0 420,966 - +0.0 420,976 + +0.0 420,977 - +0.1 421,027 - +0.0 421,056 + +0.0 421,056 + -1.0 421,056 + +0.0 421,056 + -1.0 421,056 + +1.2 421,056 + +0.7 421,057 - +0.0 421,057 - +0.7 421,057 - +0.0 421,057 - -1.0 421,057 - -0.0 421,057 - +0.0 421,057 - +0.5 421,057 - +0.0 421,057 - +0.6 421,057 - -1.0 421,057 - +0.0 421,057 - +0.1 421,087 + +0.0 421,087 + +0.2 421,088 - +0.0 421,148 + +0.3 421,149 - +0.5 421,149 - -0.0 421,178 + +0.2 421,209 + -1.2 421,210 - +0.0 421,218 + -1.0 421,218 + +0.0 421,219 - +0.9 421,245 + -1.0 421,270 + +0.0
Or see this region's nucleotide sequence