Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0334 and Rru_A0335 are separated by 148 nucleotides Rru_A0335 and Rru_AR0014 are separated by 92 nucleotides Rru_AR0014 and Rru_A0336 are separated by 141 nucleotides
Rru_A0334: Rru_A0334 - Transcriptional Regulator, LysR family (NCBI), at 405,956 to 406,918
_A0334
Rru_A0335: Rru_A0335 - YbaK/prolyl-tRNA synthetase associated region (NCBI), at 407,067 to 407,606
_A0335
Rru_AR0014: Rru_AR0014 - tRNA-Ser (NCBI), at 407,699 to 407,790
_AR0014
Rru_A0336: Rru_A0336 - hypothetical protein (NCBI), at 407,932 to 408,774
_A0336
Position (kb) 407
408 Strain fitness (log2 ratio) -1
0
1 at 406.280 kb on + strand, within Rru_A0334 at 406.280 kb on + strand, within Rru_A0334 at 406.280 kb on + strand, within Rru_A0334 at 406.280 kb on + strand, within Rru_A0334 at 406.281 kb on - strand, within Rru_A0334 at 406.281 kb on - strand, within Rru_A0334 at 406.281 kb on - strand, within Rru_A0334 at 406.319 kb on + strand, within Rru_A0334 at 406.319 kb on + strand, within Rru_A0334 at 406.320 kb on - strand, within Rru_A0334 at 407.025 kb on + strand at 407.025 kb on + strand at 407.026 kb on - strand at 407.059 kb on + strand at 407.059 kb on + strand at 407.060 kb on - strand at 407.060 kb on - strand at 407.132 kb on + strand, within Rru_A0335 at 407.132 kb on + strand, within Rru_A0335 at 407.132 kb on + strand, within Rru_A0335 at 407.132 kb on + strand, within Rru_A0335 at 407.133 kb on - strand, within Rru_A0335 at 407.180 kb on + strand, within Rru_A0335 at 407.180 kb on + strand, within Rru_A0335 at 407.180 kb on + strand, within Rru_A0335 at 407.604 kb on + strand at 407.608 kb on + strand at 407.888 kb on + strand at 407.908 kb on + strand at 408.020 kb on - strand, within Rru_A0336 at 408.265 kb on + strand, within Rru_A0336 at 408.265 kb on + strand, within Rru_A0336 at 408.265 kb on + strand, within Rru_A0336 at 408.266 kb on - strand, within Rru_A0336 at 408.266 kb on - strand, within Rru_A0336 at 408.398 kb on - strand, within Rru_A0336 at 408.520 kb on + strand, within Rru_A0336 at 408.520 kb on + strand, within Rru_A0336 at 408.520 kb on + strand, within Rru_A0336 at 408.520 kb on + strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.521 kb on - strand, within Rru_A0336 at 408.539 kb on + strand, within Rru_A0336 at 408.542 kb on + strand, within Rru_A0336 at 408.559 kb on + strand, within Rru_A0336 at 408.559 kb on + strand, within Rru_A0336 at 408.559 kb on + strand, within Rru_A0336 at 408.560 kb on - strand, within Rru_A0336
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 406,280 + Rru_A0334 0.34 +0.0 406,280 + Rru_A0334 0.34 +0.0 406,280 + Rru_A0334 0.34 +0.0 406,280 + Rru_A0334 0.34 +0.0 406,281 - Rru_A0334 0.34 +0.0 406,281 - Rru_A0334 0.34 +0.0 406,281 - Rru_A0334 0.34 +0.0 406,319 + Rru_A0334 0.38 +0.0 406,319 + Rru_A0334 0.38 +0.0 406,320 - Rru_A0334 0.38 +0.0 407,025 + +0.0 407,025 + +0.2 407,026 - +0.0 407,059 + -0.3 407,059 + +0.0 407,060 - +0.4 407,060 - +0.8 407,132 + Rru_A0335 0.12 +1.1 407,132 + Rru_A0335 0.12 +0.0 407,132 + Rru_A0335 0.12 +0.7 407,132 + Rru_A0335 0.12 -0.2 407,133 - Rru_A0335 0.12 +0.0 407,180 + Rru_A0335 0.21 +0.8 407,180 + Rru_A0335 0.21 +0.3 407,180 + Rru_A0335 0.21 +1.2 407,604 + +0.0 407,608 + +0.0 407,888 + -0.4 407,908 + -0.0 408,020 - Rru_A0336 0.10 +0.0 408,265 + Rru_A0336 0.40 +0.0 408,265 + Rru_A0336 0.40 -0.3 408,265 + Rru_A0336 0.40 +0.7 408,266 - Rru_A0336 0.40 +0.4 408,266 - Rru_A0336 0.40 +0.0 408,398 - Rru_A0336 0.55 +1.0 408,520 + Rru_A0336 0.70 +0.0 408,520 + Rru_A0336 0.70 +0.0 408,520 + Rru_A0336 0.70 +0.0 408,520 + Rru_A0336 0.70 +0.0 408,521 - Rru_A0336 0.70 +1.3 408,521 - Rru_A0336 0.70 +0.4 408,521 - Rru_A0336 0.70 +0.5 408,521 - Rru_A0336 0.70 +0.4 408,521 - Rru_A0336 0.70 +0.2 408,521 - Rru_A0336 0.70 -1.7 408,521 - Rru_A0336 0.70 +0.0 408,521 - Rru_A0336 0.70 -1.0 408,521 - Rru_A0336 0.70 +0.0 408,539 + Rru_A0336 0.72 +0.5 408,542 + Rru_A0336 0.72 +0.2 408,559 + Rru_A0336 0.74 -1.6 408,559 + Rru_A0336 0.74 +0.0 408,559 + Rru_A0336 0.74 -0.2 408,560 - Rru_A0336 0.74 +0.0
Or see this region's nucleotide sequence