Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0332

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0331 and Rru_A0332 are separated by 69 nucleotidesRru_A0332 and Rru_A0333 are separated by 158 nucleotides Rru_A0331: Rru_A0331 - Protein of unknown function DUF6, transmembrane (NCBI), at 403,118 to 404,086 _A0331 Rru_A0332: Rru_A0332 - Glutathione S-transferase-like (NCBI), at 404,156 to 404,845 _A0332 Rru_A0333: Rru_A0333 - Ferritin and Dps (NCBI), at 405,004 to 405,480 _A0333 Position (kb) 404 405Strain fitness (log2 ratio) -2 -1 0 1 2at 403.238 kb on + strand, within Rru_A0331at 403.238 kb on + strand, within Rru_A0331at 403.238 kb on + strand, within Rru_A0331at 403.238 kb on + strand, within Rru_A0331at 403.238 kb on + strand, within Rru_A0331at 403.238 kb on + strand, within Rru_A0331at 403.239 kb on - strand, within Rru_A0331at 403.239 kb on - strand, within Rru_A0331at 403.239 kb on - strand, within Rru_A0331at 403.239 kb on - strand, within Rru_A0331at 403.244 kb on + strand, within Rru_A0331at 403.245 kb on - strand, within Rru_A0331at 403.245 kb on - strand, within Rru_A0331at 403.327 kb on - strand, within Rru_A0331at 403.327 kb on - strand, within Rru_A0331at 403.327 kb on - strand, within Rru_A0331at 403.415 kb on + strand, within Rru_A0331at 403.415 kb on + strand, within Rru_A0331at 403.415 kb on + strand, within Rru_A0331at 403.415 kb on + strand, within Rru_A0331at 403.416 kb on - strand, within Rru_A0331at 403.416 kb on - strand, within Rru_A0331at 403.478 kb on + strand, within Rru_A0331at 403.478 kb on + strand, within Rru_A0331at 403.479 kb on - strand, within Rru_A0331at 403.562 kb on + strand, within Rru_A0331at 403.562 kb on + strand, within Rru_A0331at 403.562 kb on + strand, within Rru_A0331at 403.562 kb on + strand, within Rru_A0331at 403.562 kb on + strand, within Rru_A0331at 403.563 kb on - strand, within Rru_A0331at 403.563 kb on - strand, within Rru_A0331at 403.563 kb on - strand, within Rru_A0331at 403.661 kb on + strand, within Rru_A0331at 403.661 kb on + strand, within Rru_A0331at 403.662 kb on - strand, within Rru_A0331at 403.662 kb on - strand, within Rru_A0331at 403.679 kb on + strand, within Rru_A0331at 403.679 kb on + strand, within Rru_A0331at 403.680 kb on - strand, within Rru_A0331at 403.802 kb on - strand, within Rru_A0331at 403.866 kb on + strand, within Rru_A0331at 403.866 kb on + strand, within Rru_A0331at 403.867 kb on - strand, within Rru_A0331at 403.867 kb on - strand, within Rru_A0331at 403.867 kb on - strand, within Rru_A0331at 403.867 kb on - strand, within Rru_A0331at 404.108 kb on + strandat 404.108 kb on + strandat 404.159 kb on + strandat 404.159 kb on + strandat 404.159 kb on + strandat 404.160 kb on - strandat 404.160 kb on - strandat 404.160 kb on - strandat 404.160 kb on - strandat 404.160 kb on - strandat 404.160 kb on - strandat 404.160 kb on - strandat 404.169 kb on - strandat 404.169 kb on - strandat 404.169 kb on - strandat 404.172 kb on - strandat 404.231 kb on + strand, within Rru_A0332at 404.231 kb on + strand, within Rru_A0332at 404.231 kb on + strand, within Rru_A0332at 404.232 kb on - strand, within Rru_A0332at 404.232 kb on - strand, within Rru_A0332at 404.232 kb on - strand, within Rru_A0332at 404.233 kb on + strand, within Rru_A0332at 404.387 kb on + strand, within Rru_A0332at 404.388 kb on - strand, within Rru_A0332at 404.516 kb on + strand, within Rru_A0332at 404.537 kb on + strand, within Rru_A0332at 404.552 kb on + strand, within Rru_A0332at 404.612 kb on + strand, within Rru_A0332at 404.628 kb on - strand, within Rru_A0332at 404.797 kb on + strandat 404.797 kb on + strandat 405.019 kb on - strandat 405.019 kb on - strandat 405.222 kb on - strand, within Rru_A0333at 405.230 kb on + strand, within Rru_A0333at 405.248 kb on + strand, within Rru_A0333at 405.305 kb on + strand, within Rru_A0333at 405.305 kb on + strand, within Rru_A0333at 405.306 kb on - strand, within Rru_A0333at 405.306 kb on - strand, within Rru_A0333at 405.306 kb on - strand, within Rru_A0333at 405.306 kb on - strand, within Rru_A0333at 405.306 kb on - strand, within Rru_A0333at 405.306 kb on - strand, within Rru_A0333at 405.366 kb on - strand, within Rru_A0333at 405.384 kb on - strand, within Rru_A0333at 405.390 kb on + strand, within Rru_A0333at 405.391 kb on - strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.608 kb on - strandat 405.609 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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403,238 + Rru_A0331 0.12 +1.9
403,238 + Rru_A0331 0.12 +0.9
403,238 + Rru_A0331 0.12 +0.0
403,238 + Rru_A0331 0.12 +1.0
403,238 + Rru_A0331 0.12 +1.2
403,238 + Rru_A0331 0.12 +0.0
403,239 - Rru_A0331 0.12 +1.0
403,239 - Rru_A0331 0.12 +0.0
403,239 - Rru_A0331 0.12 +0.6
403,239 - Rru_A0331 0.12 +1.2
403,244 + Rru_A0331 0.13 +0.0
403,245 - Rru_A0331 0.13 -0.1
403,245 - Rru_A0331 0.13 +0.5
403,327 - Rru_A0331 0.22 +1.0
403,327 - Rru_A0331 0.22 +0.0
403,327 - Rru_A0331 0.22 +0.0
403,415 + Rru_A0331 0.31 +0.4
403,415 + Rru_A0331 0.31 +0.9
403,415 + Rru_A0331 0.31 +0.4
403,415 + Rru_A0331 0.31 +0.6
403,416 - Rru_A0331 0.31 +0.0
403,416 - Rru_A0331 0.31 +0.3
403,478 + Rru_A0331 0.37 +0.0
403,478 + Rru_A0331 0.37 +1.0
403,479 - Rru_A0331 0.37 +0.1
403,562 + Rru_A0331 0.46 -2.6
403,562 + Rru_A0331 0.46 +0.0
403,562 + Rru_A0331 0.46 +1.4
403,562 + Rru_A0331 0.46 -2.0
403,562 + Rru_A0331 0.46 +1.2
403,563 - Rru_A0331 0.46 -1.0
403,563 - Rru_A0331 0.46 +0.2
403,563 - Rru_A0331 0.46 +0.3
403,661 + Rru_A0331 0.56 +0.0
403,661 + Rru_A0331 0.56 +0.0
403,662 - Rru_A0331 0.56 +0.6
403,662 - Rru_A0331 0.56 -0.1
403,679 + Rru_A0331 0.58 +0.7
403,679 + Rru_A0331 0.58 +0.0
403,680 - Rru_A0331 0.58 +1.1
403,802 - Rru_A0331 0.71 +0.9
403,866 + Rru_A0331 0.77 -0.1
403,866 + Rru_A0331 0.77 +0.4
403,867 - Rru_A0331 0.77 -0.3
403,867 - Rru_A0331 0.77 +0.0
403,867 - Rru_A0331 0.77 -0.7
403,867 - Rru_A0331 0.77 +0.0
404,108 + +0.0
404,108 + +0.5
404,159 + +0.0
404,159 + -0.6
404,159 + +0.3
404,160 - +0.0
404,160 - -0.3
404,160 - +0.0
404,160 - +0.0
404,160 - +1.0
404,160 - -0.1
404,160 - +0.4
404,169 - +0.0
404,169 - -1.0
404,169 - +0.0
404,172 - +2.5
404,231 + Rru_A0332 0.11 +0.4
404,231 + Rru_A0332 0.11 -0.3
404,231 + Rru_A0332 0.11 +0.0
404,232 - Rru_A0332 0.11 +0.6
404,232 - Rru_A0332 0.11 +0.0
404,232 - Rru_A0332 0.11 -1.0
404,233 + Rru_A0332 0.11 +1.1
404,387 + Rru_A0332 0.33 +0.6
404,388 - Rru_A0332 0.34 +0.3
404,516 + Rru_A0332 0.52 +0.0
404,537 + Rru_A0332 0.55 +0.0
404,552 + Rru_A0332 0.57 +0.6
404,612 + Rru_A0332 0.66 +0.5
404,628 - Rru_A0332 0.68 +0.9
404,797 + +0.0
404,797 + +1.2
405,019 - +0.0
405,019 - -0.6
405,222 - Rru_A0333 0.46 -1.0
405,230 + Rru_A0333 0.47 +1.3
405,248 + Rru_A0333 0.51 +0.5
405,305 + Rru_A0333 0.63 +1.0
405,305 + Rru_A0333 0.63 -0.1
405,306 - Rru_A0333 0.63 +0.0
405,306 - Rru_A0333 0.63 +0.0
405,306 - Rru_A0333 0.63 +0.0
405,306 - Rru_A0333 0.63 +0.0
405,306 - Rru_A0333 0.63 +0.0
405,306 - Rru_A0333 0.63 +0.0
405,366 - Rru_A0333 0.76 +1.9
405,384 - Rru_A0333 0.80 +0.0
405,390 + Rru_A0333 0.81 +0.0
405,391 - Rru_A0333 0.81 +0.0
405,392 + Rru_A0333 0.81 -1.2
405,392 + Rru_A0333 0.81 -1.6
405,392 + Rru_A0333 0.81 +0.4
405,392 + Rru_A0333 0.81 +0.6
405,392 + Rru_A0333 0.81 +1.0
405,392 + Rru_A0333 0.81 +1.1
405,392 + Rru_A0333 0.81 +0.0
405,392 + Rru_A0333 0.81 +1.5
405,392 + Rru_A0333 0.81 +1.0
405,392 + Rru_A0333 0.81 +0.0
405,392 + Rru_A0333 0.81 +0.0
405,392 + Rru_A0333 0.81 +1.2
405,392 + Rru_A0333 0.81 +1.1
405,392 + Rru_A0333 0.81 -0.7
405,392 + Rru_A0333 0.81 +0.0
405,392 + Rru_A0333 0.81 +0.4
405,392 + Rru_A0333 0.81 +0.0
405,392 + Rru_A0333 0.81 +0.0
405,392 + Rru_A0333 0.81 +0.2
405,393 - Rru_A0333 0.82 +0.9
405,393 - Rru_A0333 0.82 -1.0
405,393 - Rru_A0333 0.82 +0.0
405,393 - Rru_A0333 0.82 +1.2
405,393 - Rru_A0333 0.82 +0.5
405,393 - Rru_A0333 0.82 +0.9
405,393 - Rru_A0333 0.82 +0.3
405,608 - +1.2
405,609 + -1.3

Or see this region's nucleotide sequence