Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0328 and Rru_A0329 are separated by 330 nucleotides Rru_A0329 and Rru_A0330 are separated by 59 nucleotides
Rru_A0328: Rru_A0328 - Lysine exporter protein (LYSE/YGGA) (NCBI), at 400,635 to 401,267
_A0328
Rru_A0329: Rru_A0329 - hypothetical protein (NCBI), at 401,598 to 401,993
_A0329
Rru_A0330: Rru_A0330 - Transcriptional Regulator, LysR family (NCBI), at 402,053 to 403,063
_A0330
Position (kb) 401
402 Strain fitness (log2 ratio) -1
0
1
2 at 400.607 kb on - strand at 400.607 kb on - strand at 400.607 kb on - strand at 400.607 kb on - strand at 400.607 kb on - strand at 400.607 kb on - strand at 400.607 kb on - strand at 400.802 kb on + strand, within Rru_A0328 at 400.878 kb on + strand, within Rru_A0328 at 400.879 kb on - strand, within Rru_A0328 at 400.879 kb on - strand, within Rru_A0328 at 401.034 kb on + strand, within Rru_A0328 at 401.034 kb on + strand, within Rru_A0328 at 401.040 kb on - strand, within Rru_A0328 at 401.127 kb on + strand, within Rru_A0328 at 401.127 kb on + strand, within Rru_A0328 at 401.128 kb on - strand, within Rru_A0328 at 401.128 kb on - strand, within Rru_A0328 at 401.128 kb on - strand, within Rru_A0328 at 401.128 kb on - strand, within Rru_A0328 at 401.128 kb on - strand, within Rru_A0328 at 401.128 kb on - strand, within Rru_A0328 at 401.128 kb on - strand, within Rru_A0328 at 401.174 kb on + strand, within Rru_A0328 at 401.266 kb on - strand at 401.288 kb on + strand at 401.288 kb on + strand at 401.289 kb on - strand at 401.403 kb on + strand at 401.403 kb on + strand at 401.403 kb on + strand at 401.403 kb on + strand at 401.403 kb on + strand at 401.403 kb on + strand at 401.404 kb on - strand at 401.556 kb on + strand at 401.556 kb on + strand at 401.556 kb on + strand at 401.557 kb on - strand at 401.574 kb on + strand at 401.574 kb on + strand at 401.575 kb on - strand at 401.575 kb on - strand at 401.575 kb on - strand at 401.575 kb on - strand at 401.575 kb on - strand at 401.575 kb on - strand at 401.596 kb on - strand at 401.811 kb on + strand, within Rru_A0329 at 401.811 kb on + strand, within Rru_A0329 at 401.812 kb on - strand, within Rru_A0329 at 401.812 kb on - strand, within Rru_A0329 at 401.812 kb on - strand, within Rru_A0329 at 401.991 kb on + strand at 401.992 kb on - strand at 402.537 kb on + strand, within Rru_A0330 at 402.537 kb on + strand, within Rru_A0330 at 402.538 kb on - strand, within Rru_A0330 at 402.538 kb on - strand, within Rru_A0330 at 402.538 kb on - strand, within Rru_A0330 at 402.538 kb on - strand, within Rru_A0330 at 402.538 kb on - strand, within Rru_A0330 at 402.538 kb on - strand, within Rru_A0330 at 402.988 kb on - strand at 402.989 kb on + strand at 402.989 kb on + strand at 402.990 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 400,607 - +0.5 400,607 - +0.7 400,607 - +0.4 400,607 - +0.0 400,607 - +1.3 400,607 - +0.0 400,607 - +0.5 400,802 + Rru_A0328 0.26 +0.2 400,878 + Rru_A0328 0.38 +0.4 400,879 - Rru_A0328 0.39 +0.0 400,879 - Rru_A0328 0.39 +0.0 401,034 + Rru_A0328 0.63 +0.0 401,034 + Rru_A0328 0.63 +0.0 401,040 - Rru_A0328 0.64 -0.1 401,127 + Rru_A0328 0.78 +1.6 401,127 + Rru_A0328 0.78 +1.2 401,128 - Rru_A0328 0.78 -0.7 401,128 - Rru_A0328 0.78 +1.0 401,128 - Rru_A0328 0.78 -0.1 401,128 - Rru_A0328 0.78 +0.4 401,128 - Rru_A0328 0.78 -1.0 401,128 - Rru_A0328 0.78 +0.8 401,128 - Rru_A0328 0.78 -0.1 401,174 + Rru_A0328 0.85 +0.0 401,266 - +0.1 401,288 + +1.1 401,288 + +1.7 401,289 - -0.2 401,403 + +0.0 401,403 + +2.2 401,403 + +0.6 401,403 + +1.2 401,403 + +0.5 401,403 + +0.0 401,404 - +0.0 401,556 + +0.7 401,556 + -0.1 401,556 + -0.1 401,557 - +0.0 401,574 + -1.0 401,574 + +1.0 401,575 - +0.0 401,575 - -1.0 401,575 - +2.0 401,575 - +1.1 401,575 - +0.0 401,575 - +1.3 401,596 - +1.6 401,811 + Rru_A0329 0.54 +1.3 401,811 + Rru_A0329 0.54 +0.0 401,812 - Rru_A0329 0.54 +0.5 401,812 - Rru_A0329 0.54 +0.0 401,812 - Rru_A0329 0.54 +0.8 401,991 + +0.7 401,992 - -1.0 402,537 + Rru_A0330 0.48 +0.0 402,537 + Rru_A0330 0.48 +0.0 402,538 - Rru_A0330 0.48 +0.0 402,538 - Rru_A0330 0.48 +0.8 402,538 - Rru_A0330 0.48 -0.4 402,538 - Rru_A0330 0.48 +0.2 402,538 - Rru_A0330 0.48 +0.7 402,538 - Rru_A0330 0.48 -1.6 402,988 - +0.0 402,989 + +1.6 402,989 + -0.7 402,990 - -1.0
Or see this region's nucleotide sequence