Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0324

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0322 and Rru_A0323 are separated by 37 nucleotidesRru_A0323 and Rru_A0324 are separated by 39 nucleotidesRru_A0324 and Rru_A0325 are separated by 119 nucleotides Rru_A0322: Rru_A0322 - Peptidase M52, hydrogen uptake protein (NCBI), at 391,636 to 392,100 _A0322 Rru_A0323: Rru_A0323 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 392,138 to 392,668 _A0323 Rru_A0324: Rru_A0324 - Formate dehydrogenase, alpha subunit (NCBI), at 392,708 to 394,849 _A0324 Rru_A0325: Rru_A0325 - Molybdenum cofactor biosynthesis protein (NCBI), at 394,969 to 395,976 _A0325 Position (kb) 392 393 394 395Strain fitness (log2 ratio) -1 0 1 2at 391.791 kb on - strand, within Rru_A0322at 391.791 kb on - strand, within Rru_A0322at 391.801 kb on + strand, within Rru_A0322at 391.802 kb on - strand, within Rru_A0322at 391.802 kb on - strand, within Rru_A0322at 391.802 kb on - strand, within Rru_A0322at 391.960 kb on + strand, within Rru_A0322at 391.961 kb on - strand, within Rru_A0322at 391.961 kb on - strand, within Rru_A0322at 392.078 kb on + strandat 392.078 kb on + strandat 392.079 kb on - strandat 392.079 kb on - strandat 392.079 kb on - strandat 392.370 kb on - strand, within Rru_A0323at 392.512 kb on + strand, within Rru_A0323at 392.513 kb on - strand, within Rru_A0323at 392.555 kb on - strand, within Rru_A0323at 392.700 kb on + strandat 392.700 kb on + strandat 392.735 kb on + strandat 392.837 kb on - strandat 392.844 kb on - strandat 392.995 kb on + strand, within Rru_A0324at 392.995 kb on + strand, within Rru_A0324at 392.995 kb on + strand, within Rru_A0324at 392.995 kb on + strand, within Rru_A0324at 392.996 kb on - strand, within Rru_A0324at 392.996 kb on - strand, within Rru_A0324at 392.999 kb on + strand, within Rru_A0324at 392.999 kb on + strand, within Rru_A0324at 393.000 kb on - strand, within Rru_A0324at 393.000 kb on - strand, within Rru_A0324at 393.059 kb on + strand, within Rru_A0324at 393.059 kb on + strand, within Rru_A0324at 393.060 kb on - strand, within Rru_A0324at 393.230 kb on + strand, within Rru_A0324at 393.231 kb on - strand, within Rru_A0324at 393.232 kb on + strand, within Rru_A0324at 393.233 kb on - strand, within Rru_A0324at 393.450 kb on - strand, within Rru_A0324at 393.450 kb on - strand, within Rru_A0324at 393.450 kb on - strand, within Rru_A0324at 393.471 kb on - strand, within Rru_A0324at 393.471 kb on - strand, within Rru_A0324at 393.471 kb on - strand, within Rru_A0324at 393.491 kb on + strand, within Rru_A0324at 393.492 kb on - strand, within Rru_A0324at 393.503 kb on + strand, within Rru_A0324at 393.561 kb on - strand, within Rru_A0324at 393.561 kb on - strand, within Rru_A0324at 393.767 kb on + strand, within Rru_A0324at 393.877 kb on + strand, within Rru_A0324at 393.899 kb on + strand, within Rru_A0324at 393.899 kb on + strand, within Rru_A0324at 393.902 kb on + strand, within Rru_A0324at 393.902 kb on + strand, within Rru_A0324at 393.902 kb on + strand, within Rru_A0324at 393.903 kb on - strand, within Rru_A0324at 393.903 kb on - strand, within Rru_A0324at 393.903 kb on - strand, within Rru_A0324at 393.903 kb on - strand, within Rru_A0324at 393.903 kb on - strand, within Rru_A0324at 394.071 kb on - strand, within Rru_A0324at 394.103 kb on + strand, within Rru_A0324at 394.103 kb on + strand, within Rru_A0324at 394.191 kb on - strand, within Rru_A0324at 394.199 kb on - strand, within Rru_A0324at 394.241 kb on + strand, within Rru_A0324at 394.242 kb on - strand, within Rru_A0324at 394.256 kb on + strand, within Rru_A0324at 394.280 kb on + strand, within Rru_A0324at 394.280 kb on + strand, within Rru_A0324at 394.281 kb on - strand, within Rru_A0324at 394.283 kb on - strand, within Rru_A0324at 394.325 kb on + strand, within Rru_A0324at 394.325 kb on + strand, within Rru_A0324at 394.326 kb on - strand, within Rru_A0324at 394.326 kb on - strand, within Rru_A0324at 394.326 kb on - strand, within Rru_A0324at 394.326 kb on - strand, within Rru_A0324at 394.421 kb on + strand, within Rru_A0324at 394.460 kb on + strand, within Rru_A0324at 394.461 kb on - strand, within Rru_A0324at 394.461 kb on - strand, within Rru_A0324at 394.523 kb on + strand, within Rru_A0324at 394.523 kb on + strand, within Rru_A0324at 394.523 kb on + strand, within Rru_A0324at 394.523 kb on + strand, within Rru_A0324at 394.524 kb on - strand, within Rru_A0324at 394.526 kb on - strand, within Rru_A0324at 394.526 kb on - strand, within Rru_A0324at 394.526 kb on - strand, within Rru_A0324at 394.655 kb on + strandat 394.655 kb on + strandat 394.655 kb on + strandat 394.655 kb on + strandat 394.656 kb on - strandat 394.656 kb on - strandat 394.656 kb on - strandat 394.664 kb on + strandat 394.664 kb on + strandat 394.664 kb on + strandat 394.664 kb on + strandat 394.665 kb on - strandat 394.665 kb on - strandat 394.736 kb on + strandat 394.737 kb on - strandat 394.737 kb on - strandat 394.742 kb on + strandat 394.742 kb on + strandat 394.743 kb on - strandat 394.743 kb on - strandat 394.743 kb on - strandat 394.743 kb on - strandat 394.743 kb on - strandat 394.743 kb on - strandat 394.743 kb on - strandat 394.808 kb on + strandat 394.808 kb on + strandat 394.808 kb on + strandat 394.808 kb on + strandat 394.809 kb on - strandat 394.809 kb on - strandat 394.809 kb on - strandat 394.809 kb on - strandat 394.809 kb on - strandat 394.809 kb on - strandat 394.847 kb on + strandat 394.956 kb on - strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.017 kb on + strandat 395.018 kb on - strandat 395.018 kb on - strandat 395.062 kb on + strandat 395.680 kb on + strand, within Rru_A0325at 395.681 kb on - strand, within Rru_A0325at 395.681 kb on - strand, within Rru_A0325at 395.681 kb on - strand, within Rru_A0325at 395.770 kb on - strand, within Rru_A0325

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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391,791 - Rru_A0322 0.33 +0.0
391,791 - Rru_A0322 0.33 +0.4
391,801 + Rru_A0322 0.35 +1.5
391,802 - Rru_A0322 0.36 +0.1
391,802 - Rru_A0322 0.36 +0.9
391,802 - Rru_A0322 0.36 +0.6
391,960 + Rru_A0322 0.70 +0.0
391,961 - Rru_A0322 0.70 -0.1
391,961 - Rru_A0322 0.70 +0.0
392,078 + +0.0
392,078 + +1.6
392,079 - +1.0
392,079 - +0.0
392,079 - +0.1
392,370 - Rru_A0323 0.44 +0.4
392,512 + Rru_A0323 0.70 -0.3
392,513 - Rru_A0323 0.71 -1.0
392,555 - Rru_A0323 0.79 +0.8
392,700 + +0.4
392,700 + +0.0
392,735 + +0.0
392,837 - +0.7
392,844 - +0.1
392,995 + Rru_A0324 0.13 +0.3
392,995 + Rru_A0324 0.13 +0.0
392,995 + Rru_A0324 0.13 +0.0
392,995 + Rru_A0324 0.13 +0.4
392,996 - Rru_A0324 0.13 +0.0
392,996 - Rru_A0324 0.13 -1.0
392,999 + Rru_A0324 0.14 -0.3
392,999 + Rru_A0324 0.14 +0.8
393,000 - Rru_A0324 0.14 +0.4
393,000 - Rru_A0324 0.14 -0.1
393,059 + Rru_A0324 0.16 +0.2
393,059 + Rru_A0324 0.16 +0.3
393,060 - Rru_A0324 0.16 +0.8
393,230 + Rru_A0324 0.24 -0.3
393,231 - Rru_A0324 0.24 -0.6
393,232 + Rru_A0324 0.24 +0.0
393,233 - Rru_A0324 0.25 -0.2
393,450 - Rru_A0324 0.35 +0.0
393,450 - Rru_A0324 0.35 -0.5
393,450 - Rru_A0324 0.35 +0.0
393,471 - Rru_A0324 0.36 +0.6
393,471 - Rru_A0324 0.36 -0.2
393,471 - Rru_A0324 0.36 +2.0
393,491 + Rru_A0324 0.37 -0.7
393,492 - Rru_A0324 0.37 +0.4
393,503 + Rru_A0324 0.37 +0.0
393,561 - Rru_A0324 0.40 -1.0
393,561 - Rru_A0324 0.40 +0.5
393,767 + Rru_A0324 0.49 +1.3
393,877 + Rru_A0324 0.55 +0.0
393,899 + Rru_A0324 0.56 +0.0
393,899 + Rru_A0324 0.56 +0.0
393,902 + Rru_A0324 0.56 +0.0
393,902 + Rru_A0324 0.56 +0.6
393,902 + Rru_A0324 0.56 -0.5
393,903 - Rru_A0324 0.56 +0.0
393,903 - Rru_A0324 0.56 +0.0
393,903 - Rru_A0324 0.56 +0.4
393,903 - Rru_A0324 0.56 -0.8
393,903 - Rru_A0324 0.56 +0.0
394,071 - Rru_A0324 0.64 +0.0
394,103 + Rru_A0324 0.65 +1.3
394,103 + Rru_A0324 0.65 +0.8
394,191 - Rru_A0324 0.69 +0.1
394,199 - Rru_A0324 0.70 +0.0
394,241 + Rru_A0324 0.72 +1.0
394,242 - Rru_A0324 0.72 +0.6
394,256 + Rru_A0324 0.72 +0.0
394,280 + Rru_A0324 0.73 +0.0
394,280 + Rru_A0324 0.73 +0.0
394,281 - Rru_A0324 0.73 +0.9
394,283 - Rru_A0324 0.74 +0.1
394,325 + Rru_A0324 0.75 +0.1
394,325 + Rru_A0324 0.75 +0.7
394,326 - Rru_A0324 0.76 +0.0
394,326 - Rru_A0324 0.76 +0.5
394,326 - Rru_A0324 0.76 +0.0
394,326 - Rru_A0324 0.76 -0.5
394,421 + Rru_A0324 0.80 +1.0
394,460 + Rru_A0324 0.82 +0.0
394,461 - Rru_A0324 0.82 +0.0
394,461 - Rru_A0324 0.82 +0.1
394,523 + Rru_A0324 0.85 +0.4
394,523 + Rru_A0324 0.85 +0.3
394,523 + Rru_A0324 0.85 +0.0
394,523 + Rru_A0324 0.85 +0.7
394,524 - Rru_A0324 0.85 +0.3
394,526 - Rru_A0324 0.85 -0.3
394,526 - Rru_A0324 0.85 +0.2
394,526 - Rru_A0324 0.85 +0.0
394,655 + +0.7
394,655 + +1.1
394,655 + +0.8
394,655 + +1.3
394,656 - +0.8
394,656 - +0.3
394,656 - +0.0
394,664 + -1.0
394,664 + +0.5
394,664 + +0.2
394,664 + +0.8
394,665 - +0.0
394,665 - +0.0
394,736 + +1.3
394,737 - +0.0
394,737 - -0.1
394,742 + -0.2
394,742 + +0.1
394,743 - +1.0
394,743 - +0.4
394,743 - +0.6
394,743 - -1.0
394,743 - +0.4
394,743 - +0.3
394,743 - +0.2
394,808 + +1.1
394,808 + +0.5
394,808 + +0.0
394,808 + +0.7
394,809 - +0.0
394,809 - +0.2
394,809 - +0.0
394,809 - +0.0
394,809 - +0.2
394,809 - +0.3
394,847 + +0.6
394,956 - -1.0
395,017 + +0.0
395,017 + -1.0
395,017 + +0.0
395,017 + +0.9
395,017 + +0.1
395,017 + -0.4
395,017 + +0.0
395,017 + +0.7
395,018 - +0.0
395,018 - +0.8
395,062 + -1.6
395,680 + Rru_A0325 0.71 -1.0
395,681 - Rru_A0325 0.71 +0.2
395,681 - Rru_A0325 0.71 +0.1
395,681 - Rru_A0325 0.71 -0.7
395,770 - Rru_A0325 0.79 +0.0

Or see this region's nucleotide sequence