Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0320

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0318 and Rru_A0319 overlap by 8 nucleotidesRru_A0319 and Rru_A0320 are separated by 13 nucleotidesRru_A0320 and Rru_A0321 are separated by 19 nucleotidesRru_A0321 and Rru_A0322 are separated by 9 nucleotides Rru_A0318: Rru_A0318 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 388,291 to 388,818 _A0318 Rru_A0319: Rru_A0319 - NADH-ubiquinone oxidoreductase, chain 4L (NCBI), at 388,811 to 389,476 _A0319 Rru_A0320: Rru_A0320 - NADH dehydrogenase (quinone) (NCBI), at 389,490 to 391,085 _A0320 Rru_A0321: Rru_A0321 - NADH dehydrogenase (ubiquinone), 20 kDa subunit (NCBI), at 391,105 to 391,626 _A0321 Rru_A0322: Rru_A0322 - Peptidase M52, hydrogen uptake protein (NCBI), at 391,636 to 392,100 _A0322 Position (kb) 389 390 391 392Strain fitness (log2 ratio) -1 0 1 2 3at 388.832 kb on + strandat 388.907 kb on + strand, within Rru_A0319at 388.908 kb on - strand, within Rru_A0319at 388.908 kb on - strand, within Rru_A0319at 388.980 kb on - strand, within Rru_A0319at 388.983 kb on - strand, within Rru_A0319at 388.983 kb on - strand, within Rru_A0319at 389.042 kb on + strand, within Rru_A0319at 389.042 kb on + strand, within Rru_A0319at 389.043 kb on - strand, within Rru_A0319at 389.244 kb on - strand, within Rru_A0319at 389.244 kb on - strand, within Rru_A0319at 389.244 kb on - strand, within Rru_A0319at 389.244 kb on - strand, within Rru_A0319at 389.244 kb on - strand, within Rru_A0319at 389.405 kb on + strand, within Rru_A0319at 389.405 kb on + strand, within Rru_A0319at 389.405 kb on + strand, within Rru_A0319at 389.405 kb on + strand, within Rru_A0319at 389.406 kb on - strand, within Rru_A0319at 389.406 kb on - strand, within Rru_A0319at 389.406 kb on - strand, within Rru_A0319at 389.455 kb on + strandat 389.455 kb on + strandat 389.506 kb on + strandat 389.507 kb on - strandat 389.509 kb on + strandat 389.510 kb on - strandat 389.510 kb on - strandat 389.519 kb on - strandat 389.519 kb on - strandat 389.553 kb on + strandat 389.554 kb on - strandat 389.799 kb on + strand, within Rru_A0320at 389.800 kb on - strand, within Rru_A0320at 389.823 kb on + strand, within Rru_A0320at 389.895 kb on + strand, within Rru_A0320at 389.895 kb on + strand, within Rru_A0320at 389.895 kb on + strand, within Rru_A0320at 389.895 kb on + strand, within Rru_A0320at 389.895 kb on + strand, within Rru_A0320at 389.895 kb on + strand, within Rru_A0320at 389.895 kb on + strand, within Rru_A0320at 389.895 kb on + strand, within Rru_A0320at 389.896 kb on - strand, within Rru_A0320at 389.896 kb on - strand, within Rru_A0320at 389.896 kb on - strand, within Rru_A0320at 389.896 kb on - strand, within Rru_A0320at 389.896 kb on - strand, within Rru_A0320at 389.896 kb on - strand, within Rru_A0320at 389.896 kb on - strand, within Rru_A0320at 389.943 kb on + strand, within Rru_A0320at 389.943 kb on + strand, within Rru_A0320at 389.944 kb on - strand, within Rru_A0320at 389.944 kb on - strand, within Rru_A0320at 389.976 kb on + strand, within Rru_A0320at 389.977 kb on - strand, within Rru_A0320at 389.978 kb on + strand, within Rru_A0320at 389.978 kb on + strand, within Rru_A0320at 389.978 kb on + strand, within Rru_A0320at 389.978 kb on + strand, within Rru_A0320at 389.978 kb on + strand, within Rru_A0320at 389.978 kb on + strand, within Rru_A0320at 389.978 kb on + strand, within Rru_A0320at 389.979 kb on - strand, within Rru_A0320at 389.979 kb on - strand, within Rru_A0320at 389.979 kb on - strand, within Rru_A0320at 389.983 kb on - strand, within Rru_A0320at 390.306 kb on + strand, within Rru_A0320at 390.306 kb on + strand, within Rru_A0320at 390.306 kb on + strand, within Rru_A0320at 390.307 kb on - strand, within Rru_A0320at 390.307 kb on - strand, within Rru_A0320at 390.307 kb on - strand, within Rru_A0320at 390.418 kb on - strand, within Rru_A0320at 390.418 kb on - strand, within Rru_A0320at 390.441 kb on + strand, within Rru_A0320at 390.441 kb on + strand, within Rru_A0320at 390.441 kb on + strand, within Rru_A0320at 390.441 kb on + strand, within Rru_A0320at 390.442 kb on - strand, within Rru_A0320at 390.443 kb on + strand, within Rru_A0320at 390.443 kb on + strand, within Rru_A0320at 390.444 kb on - strand, within Rru_A0320at 390.444 kb on - strand, within Rru_A0320at 390.444 kb on - strand, within Rru_A0320at 390.471 kb on + strand, within Rru_A0320at 390.472 kb on - strand, within Rru_A0320at 390.472 kb on - strand, within Rru_A0320at 390.472 kb on - strand, within Rru_A0320at 390.483 kb on + strand, within Rru_A0320at 390.496 kb on - strand, within Rru_A0320at 390.521 kb on + strand, within Rru_A0320at 390.521 kb on + strand, within Rru_A0320at 390.522 kb on - strand, within Rru_A0320at 390.522 kb on - strand, within Rru_A0320at 390.558 kb on + strand, within Rru_A0320at 390.558 kb on + strand, within Rru_A0320at 390.559 kb on - strand, within Rru_A0320at 390.559 kb on - strand, within Rru_A0320at 390.696 kb on + strand, within Rru_A0320at 390.696 kb on + strand, within Rru_A0320at 390.696 kb on + strand, within Rru_A0320at 390.696 kb on + strand, within Rru_A0320at 390.790 kb on - strand, within Rru_A0320at 391.084 kb on - strandat 391.114 kb on + strandat 391.115 kb on - strandat 391.222 kb on + strand, within Rru_A0321at 391.223 kb on - strand, within Rru_A0321at 391.223 kb on - strand, within Rru_A0321at 391.225 kb on + strand, within Rru_A0321at 391.225 kb on + strand, within Rru_A0321at 391.226 kb on - strand, within Rru_A0321at 391.226 kb on - strand, within Rru_A0321at 391.336 kb on + strand, within Rru_A0321at 391.337 kb on - strand, within Rru_A0321at 391.414 kb on + strand, within Rru_A0321at 391.414 kb on + strand, within Rru_A0321at 391.415 kb on - strand, within Rru_A0321at 391.415 kb on - strand, within Rru_A0321at 391.415 kb on - strand, within Rru_A0321at 391.459 kb on + strand, within Rru_A0321at 391.459 kb on + strand, within Rru_A0321at 391.459 kb on + strand, within Rru_A0321at 391.460 kb on - strand, within Rru_A0321at 391.460 kb on - strand, within Rru_A0321at 391.460 kb on - strand, within Rru_A0321at 391.460 kb on - strand, within Rru_A0321at 391.460 kb on - strand, within Rru_A0321at 391.547 kb on - strand, within Rru_A0321at 391.547 kb on - strand, within Rru_A0321at 391.547 kb on - strand, within Rru_A0321at 391.791 kb on - strand, within Rru_A0322at 391.791 kb on - strand, within Rru_A0322at 391.801 kb on + strand, within Rru_A0322at 391.802 kb on - strand, within Rru_A0322at 391.802 kb on - strand, within Rru_A0322at 391.802 kb on - strand, within Rru_A0322at 391.960 kb on + strand, within Rru_A0322at 391.961 kb on - strand, within Rru_A0322at 391.961 kb on - strand, within Rru_A0322at 392.078 kb on + strandat 392.078 kb on + strandat 392.079 kb on - strandat 392.079 kb on - strandat 392.079 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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388,832 + -0.0
388,907 + Rru_A0319 0.14 -0.0
388,908 - Rru_A0319 0.15 -0.1
388,908 - Rru_A0319 0.15 +0.6
388,980 - Rru_A0319 0.25 -0.0
388,983 - Rru_A0319 0.26 +0.5
388,983 - Rru_A0319 0.26 -1.6
389,042 + Rru_A0319 0.35 +0.7
389,042 + Rru_A0319 0.35 -0.0
389,043 - Rru_A0319 0.35 +0.7
389,244 - Rru_A0319 0.65 +0.3
389,244 - Rru_A0319 0.65 -0.0
389,244 - Rru_A0319 0.65 +1.1
389,244 - Rru_A0319 0.65 -0.0
389,244 - Rru_A0319 0.65 +0.7
389,405 + Rru_A0319 0.89 +0.1
389,405 + Rru_A0319 0.89 -0.4
389,405 + Rru_A0319 0.89 -0.0
389,405 + Rru_A0319 0.89 -0.0
389,406 - Rru_A0319 0.89 -0.0
389,406 - Rru_A0319 0.89 -0.0
389,406 - Rru_A0319 0.89 +0.4
389,455 + -1.2
389,455 + +0.9
389,506 + -0.0
389,507 - +1.2
389,509 + -0.0
389,510 - -0.0
389,510 - -0.0
389,519 - -0.0
389,519 - +0.1
389,553 + -0.0
389,554 - -0.3
389,799 + Rru_A0320 0.19 +0.1
389,800 - Rru_A0320 0.19 +0.5
389,823 + Rru_A0320 0.21 +0.4
389,895 + Rru_A0320 0.25 +0.5
389,895 + Rru_A0320 0.25 +0.3
389,895 + Rru_A0320 0.25 -1.3
389,895 + Rru_A0320 0.25 +0.0
389,895 + Rru_A0320 0.25 +0.0
389,895 + Rru_A0320 0.25 -0.1
389,895 + Rru_A0320 0.25 +0.0
389,895 + Rru_A0320 0.25 +1.3
389,896 - Rru_A0320 0.25 +0.2
389,896 - Rru_A0320 0.25 -0.6
389,896 - Rru_A0320 0.25 +0.0
389,896 - Rru_A0320 0.25 +0.0
389,896 - Rru_A0320 0.25 +0.9
389,896 - Rru_A0320 0.25 +1.3
389,896 - Rru_A0320 0.25 +0.0
389,943 + Rru_A0320 0.28 +0.4
389,943 + Rru_A0320 0.28 +0.0
389,944 - Rru_A0320 0.28 +0.0
389,944 - Rru_A0320 0.28 +0.0
389,976 + Rru_A0320 0.30 +0.5
389,977 - Rru_A0320 0.31 +0.0
389,978 + Rru_A0320 0.31 +0.5
389,978 + Rru_A0320 0.31 +0.0
389,978 + Rru_A0320 0.31 +0.1
389,978 + Rru_A0320 0.31 -0.3
389,978 + Rru_A0320 0.31 +0.4
389,978 + Rru_A0320 0.31 +0.0
389,978 + Rru_A0320 0.31 +0.0
389,979 - Rru_A0320 0.31 +0.9
389,979 - Rru_A0320 0.31 +0.8
389,979 - Rru_A0320 0.31 +0.3
389,983 - Rru_A0320 0.31 +0.0
390,306 + Rru_A0320 0.51 +0.0
390,306 + Rru_A0320 0.51 +0.0
390,306 + Rru_A0320 0.51 +0.0
390,307 - Rru_A0320 0.51 +0.7
390,307 - Rru_A0320 0.51 +0.0
390,307 - Rru_A0320 0.51 -1.0
390,418 - Rru_A0320 0.58 +0.0
390,418 - Rru_A0320 0.58 +0.0
390,441 + Rru_A0320 0.60 +0.0
390,441 + Rru_A0320 0.60 +2.8
390,441 + Rru_A0320 0.60 +0.7
390,441 + Rru_A0320 0.60 +0.4
390,442 - Rru_A0320 0.60 +0.0
390,443 + Rru_A0320 0.60 +0.0
390,443 + Rru_A0320 0.60 -0.2
390,444 - Rru_A0320 0.60 +0.0
390,444 - Rru_A0320 0.60 -1.4
390,444 - Rru_A0320 0.60 +0.0
390,471 + Rru_A0320 0.61 +0.0
390,472 - Rru_A0320 0.62 +0.3
390,472 - Rru_A0320 0.62 -0.3
390,472 - Rru_A0320 0.62 +0.0
390,483 + Rru_A0320 0.62 +0.7
390,496 - Rru_A0320 0.63 +0.0
390,521 + Rru_A0320 0.65 -0.4
390,521 + Rru_A0320 0.65 +0.0
390,522 - Rru_A0320 0.65 +0.4
390,522 - Rru_A0320 0.65 +0.6
390,558 + Rru_A0320 0.67 +0.5
390,558 + Rru_A0320 0.67 +0.0
390,559 - Rru_A0320 0.67 +0.3
390,559 - Rru_A0320 0.67 +0.0
390,696 + Rru_A0320 0.76 +0.0
390,696 + Rru_A0320 0.76 -0.0
390,696 + Rru_A0320 0.76 +0.0
390,696 + Rru_A0320 0.76 +0.0
390,790 - Rru_A0320 0.81 -0.1
391,084 - +0.9
391,114 + +0.0
391,115 - +0.2
391,222 + Rru_A0321 0.22 +0.0
391,223 - Rru_A0321 0.23 +1.3
391,223 - Rru_A0321 0.23 +0.3
391,225 + Rru_A0321 0.23 +0.7
391,225 + Rru_A0321 0.23 +0.0
391,226 - Rru_A0321 0.23 -0.1
391,226 - Rru_A0321 0.23 +0.0
391,336 + Rru_A0321 0.44 -0.3
391,337 - Rru_A0321 0.44 -1.0
391,414 + Rru_A0321 0.59 +0.0
391,414 + Rru_A0321 0.59 +0.3
391,415 - Rru_A0321 0.59 -0.2
391,415 - Rru_A0321 0.59 +0.8
391,415 - Rru_A0321 0.59 +0.0
391,459 + Rru_A0321 0.68 +0.3
391,459 + Rru_A0321 0.68 +0.0
391,459 + Rru_A0321 0.68 +0.0
391,460 - Rru_A0321 0.68 +0.0
391,460 - Rru_A0321 0.68 +0.6
391,460 - Rru_A0321 0.68 +0.0
391,460 - Rru_A0321 0.68 +1.4
391,460 - Rru_A0321 0.68 +0.6
391,547 - Rru_A0321 0.85 +0.0
391,547 - Rru_A0321 0.85 +0.2
391,547 - Rru_A0321 0.85 +0.0
391,791 - Rru_A0322 0.33 +0.0
391,791 - Rru_A0322 0.33 +0.4
391,801 + Rru_A0322 0.35 +1.5
391,802 - Rru_A0322 0.36 +0.1
391,802 - Rru_A0322 0.36 +0.9
391,802 - Rru_A0322 0.36 +0.6
391,960 + Rru_A0322 0.70 +0.0
391,961 - Rru_A0322 0.70 -0.1
391,961 - Rru_A0322 0.70 +0.0
392,078 + +0.0
392,078 + +1.6
392,079 - +1.0
392,079 - +0.0
392,079 - +0.1

Or see this region's nucleotide sequence